PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g05340 | ||||||||
Common Name | GSCOC_T00022284001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | AP2 | ||||||||
Protein Properties | Length: 214aa MW: 24570.4 Da PI: 10.5814 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 51.4 | 2.6e-16 | 57 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n k+ ++++lg ++ +e Aa a++ a++k++g Cc04_g05340 57 SVYRGVTRHRWTGRYEAHLWDkNCWNEsqnKKgRQVYLGAYDDEEAAAHAYDLAALKYWG 116 78*******************999955656446*************************98 PP | |||||||
2 | AP2 | 29.5 | 1.9e-09 | 159 | 193 | 1 | 38 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgt 38 s+y+GV +++ +grW+A+I + g +k+ +lg++ t Cc04_g05340 159 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYVT 193 89****99**********99966...3.6********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.37E-17 | 57 | 126 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-12 | 57 | 116 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.1E-25 | 58 | 130 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 20.336 | 58 | 124 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.6E-17 | 58 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 59 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.8E-6 | 106 | 126 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-6 | 159 | 195 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-5 | 159 | 192 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 0.024 | 160 | 202 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 8.953 | 160 | 193 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-5 | 160 | 195 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAKSSKQKTS STTTTTTTSI DADNNNSSNS TTPVVKTTKT KRTRKSVPRD SPQQRSSVYR 60 GVTRHRWTGR YEAHLWDKNC WNESQNKKGR QVYLGAYDDE EAAAHAYDLA ALKYWGQDTI 120 LNFPLSTYGN ELSEMEGQSK EEYIGSLRRK SSGFSRGVSK YRGVARHHHN GRWEARIGRV 180 FGNKYLYLGT YVTPMHVMQL HKKKQRLHMT WQQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027121550.1 | 1e-141 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_027122727.1 | 1e-141 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Refseq | XP_027124636.1 | 1e-141 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 7e-88 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | A0A068TSE1 | 1e-158 | A0A068TSE1_COFCA; Uncharacterized protein | ||||
STRING | Gorai.009G008800.1 | 1e-105 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1815 | 24 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 1e-79 | ARIA-interacting double AP2 domain protein |
Publications ? help Back to Top | |||
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