PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g04880
Common NameGSCOC_T00022227001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 183aa    MW: 20838.4 Da    PI: 5.7062
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g04880genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18755254
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkle 54
                 +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + 
  Cc04_g04880  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARLMC 55
                 69******9.**********8.....334**********************8775 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000188.58E-35666No hitNo description
SuperFamilySSF541711.44E-20765IPR016177DNA-binding domain
SMARTSM003803.3E-39770IPR001471AP2/ERF domain
PfamPF008472.0E-11756IPR001471AP2/ERF domain
PROSITE profilePS5103220.719764IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-33764IPR001471AP2/ERF domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MGRPEQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARLMCGPRAR  60
TNFAYNDSDP DSSSTKFLSA TLIAKLQRCH MTSLKMVNKR PVLAQENQEQ QCGSRGNRVL  120
DGIGERDGEM QFVVPLNQDR CESQGESLSG QEFKSLEDDH IEQMIQELLD YSPVELSCVM  180
QN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-16663462ATERF1
3gcc_A4e-16663462ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027123482.11e-136ethylene-responsive transcription factor ERF003-like
SwissprotQ94AW54e-63ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A068TQD81e-134A0A068TQD8_COFCA; Uncharacterized protein
STRINGSolyc06g068360.2.12e-79(Solanum lycopersicum)
STRINGXP_009591775.11e-79(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13622476
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.16e-54ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]