PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g03460 | ||||||||
Common Name | GSCOC_T00022041001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | Trihelix | ||||||||
Protein Properties | Length: 373aa MW: 42774.7 Da PI: 4.3091 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 48.8 | 1.8e-15 | 138 | 222 | 2 | 86 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 W+++e+ L++a ++ + +r++l+ W+ev++k+ ++ ++ r+ +qC+++++ l+k+ykk+k+ ++ t + +s+++yf++++ Cc04_g03460 138 WSEHETFILLDAWGDKFLQHGRKSLRSEEWQEVAEKVsQQSKIDRTDTQCRNRLDTLKKKYKKEKAKLGE-TVNFVSKWVYFQKMD 222 *************************************778899**************************9.578888********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 5.0E-22 | 137 | 224 | No hit | No description |
PROSITE profile | PS50090 | 6.226 | 138 | 195 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.2E-5 | 153 | 207 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 373 aa Download sequence Send to blast |
MDDTEDDARY PPNTYGMSQG YGSSNRQKLP VRNAGQNVIN QYVEDDDVDD EEEEVEDEEE 60 DDDNEENGVQ RVERDEFDDD NEDDDDDDYG DMQRHPKKRK LKSLLSSYEF APRVPATSAA 120 PVPVPKPSFG GRNAVADWSE HETFILLDAW GDKFLQHGRK SLRSEEWQEV AEKVSQQSKI 180 DRTDTQCRNR LDTLKKKYKK EKAKLGETVN FVSKWVYFQK MDMLLSSPPQ QAGLSCGVDS 240 GEYVFMNPGE YLNRSNGLDE MRDSPGISES AEAEEDDSEG LPPKRTKTVR DRGNGASFKL 300 LADSIEKFSE IYEKIENSKR QQILELEKMR MDFHRELELQ KRQILERAQA EIAKIRQGDD 360 EDNDVSAENI SR* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027123114.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
Refseq | XP_027123115.1 | 0.0 | trihelix transcription factor ASIL2-like | ||||
TrEMBL | A0A068TP07 | 0.0 | A0A068TP07_COFCA; Uncharacterized protein | ||||
STRING | XP_009609888.1 | 1e-171 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA7230 | 24 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G24490.1 | 7e-71 | Trihelix family protein |