PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g03010 | ||||||||
Common Name | GSCOC_T00021986001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | CPP | ||||||||
Protein Properties | Length: 152aa MW: 17327.2 Da PI: 8.3318 | ||||||||
Description | CPP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCR | 39.9 | 8.3e-13 | 33 | 72 | 2 | 42 |
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 ++k+C+Ck+s+C+k+YC Cfa+ k+C+ C+C++C+N+ e+ Cc04_g03010 33 KEKHCKCKQSSCVKMYCLCFASSKYCDG-CNCSNCQNTFEN 72 689*************************.********9875 PP | |||||||
2 | TCR | 39.4 | 1.2e-12 | 111 | 146 | 5 | 40 |
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 gC Ck+s+C++ YCeC+ a+ Cs++CkC++CkN++ Cc04_g03010 111 GCCCKRSRCIQGYCECYRANIICSKNCKCKNCKNSR 146 8*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01114 | 9.9E-13 | 32 | 72 | IPR033467 | Tesmin/TSO1-like CXC domain |
PROSITE profile | PS51634 | 27.298 | 33 | 147 | IPR005172 | CRC domain |
Pfam | PF03638 | 2.8E-9 | 35 | 69 | IPR005172 | CRC domain |
SMART | SM01114 | 2.6E-6 | 111 | 148 | IPR033467 | Tesmin/TSO1-like CXC domain |
Pfam | PF03638 | 1.3E-9 | 111 | 145 | IPR005172 | CRC domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 152 aa Download sequence Send to blast |
MLNLKPYLCS LQLKPSPKIE FDDFKLRGEI PAKEKHCKCK QSSCVKMYCL CFASSKYCDG 60 CNCSNCQNTF ENEEVRQASI GLILQRNQKA FRTMVVSSPE CSQDSEVMYI GCCCKRSRCI 120 QGYCECYRAN IICSKNCKCK NCKNSRAYEE M* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5fd3_A | 1e-17 | 35 | 144 | 12 | 120 | Protein lin-54 homolog |
5fd3_B | 1e-17 | 35 | 144 | 12 | 120 | Protein lin-54 homolog |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a role in development of both male and female reproductive tissues. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027168102.1 | 3e-63 | protein tesmin/TSO1-like CXC 6 | ||||
Swissprot | Q9SZD1 | 7e-35 | TCX5_ARATH; Protein tesmin/TSO1-like CXC 5 | ||||
TrEMBL | A0A068TNV6 | 1e-104 | A0A068TNV6_COFCA; Uncharacterized protein |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G25790.1 | 5e-29 | Tesmin/TSO1-like CXC domain-containing protein |