PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g02760
Common NameGSCOC_T00021957001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 252aa    MW: 26980.9 Da    PI: 4.4211
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g02760genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.39.3e-1962112155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Cc04_g02760  62 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTYSTAEMAARAHDVAALSIKG 112
                  68*****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-1362112IPR001471AP2/ERF domain
PROSITE profilePS5103223.23563120IPR001471AP2/ERF domain
SMARTSM003802.3E-3763126IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-3263121IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-2163121IPR016177DNA-binding domain
PRINTSPR003671.7E-106475IPR001471AP2/ERF domain
CDDcd000182.08E-3164120No hitNo description
PRINTSPR003671.7E-1086102IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MIMSEPPSSC SSSLSSSSSS SSSSGSTQSN PSAELVKVSK EEEEEDRPPL KRQRDNSGNK  60
HPVYRGVRMR SWGKWVSEIR EPRKKSRIWL GTYSTAEMAA RAHDVAALSI KGNSAILNFP  120
QLVESLPRPV SLAPRDVQAA AAKAAAMAEL SSLCSSSSSS LSSSVSDSIS SPSTTTMTTS  180
SEELDEIIEL PSLEESFDSS ELTLSDSVVD GWLFPPWWVP DAEFYGYLLG QAAVGDCELL  240
KPTSFGDIEM G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2058121973Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcriptional activator.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Slightly induced by cold stress. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125187.11e-176ethylene-responsive transcription factor TINY
SwissprotQ391277e-59TINY_ARATH; Ethylene-responsive transcription factor TINY
TrEMBLA0A068TNT21e-177A0A068TNT2_COFCA; Uncharacterized protein
STRINGSolyc06g066540.1.19e-74(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.11e-49ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]