PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01770
Common NameGSCOC_T00021837001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 364aa    MW: 39894.9 Da    PI: 6.095
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01770genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.82.6e-181461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEde+lv+++  +G g+W+t++r+ g+ R++k+c++rw +yl
      Cc04_g01770 14 RGLWSPEEDEKLVNYISTYGHGCWSTVPRRAGLQRCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding48.52.1e-1567109145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      rg+++++E  l++++++ lG++ W+ Ia++++ gRt++++k++w+
      Cc04_g01770  67 RGSFSPQEASLIIELHRVLGNR-WAQIAKHLP-GRTDNEVKNFWN 109
                      899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.3E-26664IPR009057Homeodomain-like
PROSITE profilePS5129418.236961IPR017930Myb domain
SuperFamilySSF466892.47E-2911108IPR009057Homeodomain-like
SMARTSM007178.5E-141363IPR001005SANT/Myb domain
PfamPF002491.1E-151461IPR001005SANT/Myb domain
CDDcd001674.45E-121761No hitNo description
PROSITE profilePS5129424.80462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.6E-2565117IPR009057Homeodomain-like
SMARTSM007172.7E-1566114IPR001005SANT/Myb domain
PfamPF002493.7E-1467110IPR001005SANT/Myb domain
CDDcd001673.22E-1169109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0009901Biological Processanther dehiscence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MGHHSCCNKQ KVKRGLWSPE EDEKLVNYIS TYGHGCWSTV PRRAGLQRCG KSCRLRWINY  60
LRPDLKRGSF SPQEASLIIE LHRVLGNRWA QIAKHLPGRT DNEVKNFWNS SIKKKLVSHH  120
GLPDLCNFPP NLSSAFAPGA SVESFFSVNA NPNLIPGAHF DNLYIPTMAS TLQGFDHNIH  180
NDIIGVDEMN NFPNLVPVPT VTTPMIDSPI CSCDPVWPAG NPQSDNHHLD PPLASAALFN  240
ASNVQLIHPN MIIQSYNDVD DVLMAHGTPK ICEILEEGDQ YNLPSLSTDT ISQEVDPIAA  300
SLSGFLPSAS DPCAQIEPGN RQLLESIESL VSMMPPSSSS SSSSSLSLSQ CLQYYHAANA  360
YEP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-32141167108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027126856.10.0transcription factor MYB26-like
RefseqXP_027167856.10.0transcription factor MYB26-like
TrEMBLA0A068TNT30.0A0A068TNT3_COFCA; Uncharacterized protein
STRINGVIT_09s0002g01670.t014e-99(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13890.23e-79myb domain protein 26