PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01380
Common NameGSCOC_T00021788001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 278aa    MW: 31037.5 Da    PI: 7.2371
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01380genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.46e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed ll d++k +G g W++ +++ g++R++k+c++rw++yl
      Cc04_g01380 14 RGAWTPSEDRLLTDYIKSHGEGKWRSLPKRAGLKRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding30.87e-1067113147
                      TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 
                      rg+ T +E++l+++++k+lG++   t ++   +++ gRt++++k++w++ 
      Cc04_g01380  67 RGNITDDEEDLIIRLHKLLGNRpvhTHSS--GRLP-GRTDNEIKNYWNTN 113
                      7999******************8755555..8888.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.682965IPR017930Myb domain
SuperFamilySSF466892.97E-2412110IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002493.3E-151461IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-241568IPR009057Homeodomain-like
CDDcd001673.85E-111661No hitNo description
PROSITE profilePS5129411.59666118IPR017930Myb domain
SMARTSM007175.0E-566116IPR001005SANT/Myb domain
PfamPF002491.3E-767114IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-1669117IPR009057Homeodomain-like
CDDcd001671.09E-571114No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRSPCCAKE GLNRGAWTPS EDRLLTDYIK SHGEGKWRSL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI TDDEEDLIIR LHKLLGNRPV HTHSSGRLPG RTDNEIKNYW NTNLAKKYQS  120
GERLAASSSC TKRNPSSTTL LHKLTSSAHQ PPNSEKREGS STYVVRTKAR SEKVGPVPAS  180
GGGTESPPTF SGEEGYSSGF MMDFEMDNDF LSDFLNMEFE RDFPEVVAQG TDNNEANDFS  240
FNCCPRALSH DDRNDHADLG SITDLLDTAV TWLHEVQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-211211725127MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125290.10.0transcription factor MYB4-like isoform X1
RefseqXP_027125291.10.0transcription factor MYB4-like isoform X1
TrEMBLA0A068TP950.0A0A068TP95_COFCA; Uncharacterized protein
STRINGEOY272336e-77(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22640.11e-57myb domain protein 3