PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc04_g01360 | ||||||||
Common Name | GSCOC_T00021784001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | MYB | ||||||||
Protein Properties | Length: 210aa MW: 23949 Da PI: 9.798 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 64.8 | 1.7e-20 | 28 | 75 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT eEd +l++a++ +G+++WktIa++ g++R++k+c++rw +yl Cc04_g01360 28 RGSWTDEEDRKLAEAIEIYGPKRWKTIASKAGLKRCGKSCRLRWMNYL 75 89********************************************97 PP | |||||||
2 | Myb_DNA-binding | 51.9 | 1.7e-16 | 81 | 126 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ + +E++l+v+++k+lG++ W++Ia +++ gRt++++k++w+++l Cc04_g01360 81 RGNISDQEEDLIVRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNSHL 126 78999*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 25.844 | 23 | 79 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.58E-29 | 26 | 122 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-17 | 27 | 77 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-18 | 28 | 75 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.0E-25 | 29 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.16E-12 | 30 | 75 | No hit | No description |
PROSITE profile | PS51294 | 20.759 | 80 | 130 | IPR017930 | Myb domain |
SMART | SM00717 | 2.2E-15 | 80 | 128 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-14 | 81 | 126 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-25 | 83 | 130 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 6.89E-10 | 85 | 126 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0090378 | Biological Process | seed trichome elongation | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MDDHESVKEE VNPAVMLKNQ SAEKGANRGS WTDEEDRKLA EAIEIYGPKR WKTIASKAGL 60 KRCGKSCRLR WMNYLRPNIK RGNISDQEED LIVRLHKLLG NRWSLIAGRL PGRTDNEIKN 120 YWNSHLSKKV HQKEKQSKGT AEMGCSRIRK KRKAMKEVKA DRTREGNSSS GGAPGDSKLS 180 FDVDDFFDFS NEDPMTLEWI SKFTEMDDG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-31 | 27 | 130 | 26 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027125295.1 | 1e-153 | transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 3e-52 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A068TNE5 | 1e-153 | A0A068TNE5_COFCA; Uncharacterized protein | ||||
STRING | EOY27239 | 5e-92 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G14750.1 | 1e-54 | myb domain protein 66 |