PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g01350
Common NameGSCOC_T00021783001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family AP2
Protein Properties Length: 612aa    MW: 67644 Da    PI: 6.7896
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g01350genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.91.7e-15269328155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Cc04_g01350 269 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAARAYDLAALKYWG 328
                  78*******************655454478446*************************98 PP
2AP246.11.2e-14373422355
          AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ +++g
  Cc04_g01350 373 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIRFRG 422
                  9***************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.8E-12269328IPR001471AP2/ERF domain
CDDcd000182.19E-21269336No hitNo description
SuperFamilySSF541719.15E-17269337IPR016177DNA-binding domain
SMARTSM003806.9E-29270342IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.0E-16270336IPR001471AP2/ERF domain
PROSITE profilePS5103219.177270336IPR001471AP2/ERF domain
PRINTSPR003671.7E-6271282IPR001471AP2/ERF domain
CDDcd000182.23E-24371432No hitNo description
SuperFamilySSF541711.83E-17371432IPR016177DNA-binding domain
SMARTSM003805.0E-34372436IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-18372430IPR001471AP2/ERF domain
PROSITE profilePS5103219.098372430IPR001471AP2/ERF domain
PfamPF008472.4E-9373422IPR001471AP2/ERF domain
PRINTSPR003671.7E-6412432IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MSNWLGFSLT PHLRIHDDDD EQNDFGGQTD QNQQRGGGST PPTSVAMALR SDGSLCMMDT  60
FGLPSSDWRR YENALDDATN LRNGEGPKLE DFMGRCYTTN SPPPDPSSNI DRRVYCQLPQ  120
QQQGEINVNI PPHCNGWEME IERREHLITT TATPSSSSLI HPSYPFSYHM SSQDTISNRC  180
DPNSNMNGML YHVPFDGATT VSGFKSWLRQ TPSPADTNEI SVQESNQNNF EALSLGINPG  240
AADQPGTSSS AKDSAAPRKS IDTFGQRTSQ YRGVTRHRWT GRYEAHLWDN SCRKEGQTRK  300
GRQVYLGGYD KEEKAARAYD LAALKYWGPT THINFPLCSY EKELEDMKAT TRQEFVAHLR  360
RKSSGFSRGA SMYRGVTRHH QHGRWQARIG RVAGNKDLYL GTFSTQEEAA EAYDIAAIRF  420
RGTSAVTNFD ISRYDVRRIC SSSTLIAGDL AKAKRSPRNS RPSSVVDDNN SCASSASPQP  480
LVAITNREAS QHGWNVMVWS SSTDHDQRLQ DHETNSNDML QFSASGSRCS STPQSPKDPV  540
GSTGSPGKNG GEFGVEGDYS QLYFSLEGPN SKPKYGDGNN GSEDRDTSSN RLANTGSVHP  600
VPMFSLWNSS I*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027167848.10.0AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-127AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A068TPI40.0A0A068TPI4_COFCA; Uncharacterized protein
STRINGEOY272400.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA87772127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-123AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]