PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc04_g00840
Common NameGSCOC_T00021709001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 405aa    MW: 45232.8 Da    PI: 4.5927
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc04_g00840genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-19131180255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  Cc04_g00840 131 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDTEARRIRG 180
                  69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.02E-32131189No hitNo description
SuperFamilySSF541714.25E-22131190IPR016177DNA-binding domain
SMARTSM003801.4E-37131194IPR001471AP2/ERF domain
PROSITE profilePS5103224.052131188IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-32131190IPR001471AP2/ERF domain
PfamPF008473.2E-11132179IPR001471AP2/ERF domain
PRINTSPR003671.3E-11132143IPR001471AP2/ERF domain
PRINTSPR003671.3E-11154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 405 aa     Download sequence    Send to blast
MCGGAIISDF IPPSRSSRRL TADLLWGTGA DFPGTKKDIN KKKKNNKKNT SDLYSKPLRS  60
EVVDLDDEFE TDFQEFNDHS DDEAEELEDV KPFGFSASKH SAIPPRGTKY GKSSDSSEES  120
EKYSKRKRKN QYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDTEARRIRG  180
KKAKVNFPDE TQGSASRRPV AVNPQKLQVK ENPGPVQPTL SESMTFTSSM ENDYYNSLNL  240
VEEKPPTKQF GYADVYPTIG DMEFKSFPQS DCASLYFNSD QGSNSFDCSD FGWGEQCPKT  300
PEISSILSSA IEVEESQFSE DTNPSKKLKS SLDLVPAADN DNKLSEELSA FESQMKFDQM  360
PLFDGNWEAS VDTFLNGDAT QGGGNAMEDL WTFDDISAMM GGVY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-21131188260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787310.0KF278731.1 Coffea arabica ethylene response factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027122579.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A068TR140.0A0A068TR14_COFCA; Uncharacterized protein
STRINGXP_009775920.11e-166(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14462466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.32e-65related to AP2 12