PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc03_g13820 | ||||||||
Common Name | GSCOC_T00031737001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 200aa MW: 21180.9 Da PI: 9.0577 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.2 | 2.8e-08 | 1 | 18 | 10 | 27 |
GGTS--TTTTT-SS-SSS CS zf-CCCH 10 artGtCkyGdrCkFaHgp 27 +rtG Ck+G++Ck+ H++ Cc03_g13820 1 MRTGNCKFGASCKYQHPR 18 8***************96 PP | |||||||
2 | zf-CCCH | 22.2 | 2.5e-07 | 39 | 64 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C+++ +tG+ kyG +Ck++H++ Cc03_g13820 39 GEKECSYYVKTGQSKYGVTCKYHHPQ 64 7899********************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.854 | 1 | 19 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 7.6E-6 | 1 | 18 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 10.822 | 37 | 65 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.9E-5 | 39 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 200 aa Download sequence Send to blast |
MRTGNCKFGA SCKYQHPRQG SGSQTPVTLN FFGYPLRPGE KECSYYVKTG QSKYGVTCKY 60 HHPQPAATEP APAIYPPVQS PSVQSSQQYV VVAGNWPVPR PTLLPGSYIP GTYGPMLLPP 120 AMVPLPAWTS YPTPVSLAAT ASTQPAVGAG HIYGISQLSP SAPAYTGQYL SIPPAAGPSG 180 SSQREHAFPE RPGQPECQY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027116055.1 | 1e-112 | zinc finger CCCH domain-containing protein 32-like | ||||
Swissprot | Q5NAW2 | 1e-61 | C3H6_ORYSJ; Zinc finger CCCH domain-containing protein 6 | ||||
TrEMBL | A0A068URF5 | 1e-138 | A0A068URF5_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400058323 | 4e-91 | (Solanum tuberosum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47850.3 | 7e-48 | C3H family protein |
Publications ? help Back to Top | |||
---|---|---|---|
|