PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g12730 | ||||||||
Common Name | GSCOC_T00015164001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | B3 | ||||||||
Protein Properties | Length: 216aa MW: 23847.3 Da PI: 6.6153 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 45.8 | 1.1e-14 | 109 | 187 | 1 | 74 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 f k+lt+sd+++ g +++p+ +ae++ ++ + t+ +d +g +W++++iyr++++r++lt+G + Fv+++++ Cc03_g12730 109 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGDTWKFRHIYRGTPRRHLLTTGGSTFVNSKNI 187 89****************************996555555..89***********************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.03E-23 | 104 | 188 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.3E-25 | 106 | 193 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.61E-12 | 108 | 199 | No hit | No description |
SMART | SM01019 | 6.3E-7 | 109 | 210 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.4E-13 | 109 | 189 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 216 aa Download sequence Send to blast |
MIAFMDSKDK VHETEKCLDS QLWHACVGSM VQMPPANSKV LYFPQGHAEH ACGNVDFGNC 60 PVIPAYTRCR VSAIKFMADS ETDEVFAKVQ LIPIEGNGAD FDEDGPTSFA KTLTQSDANN 120 GGGFSVPRYC AETIFPRLDY SADPPVQTIL AKDVHGDTWK FRHIYRGTPR RHLLTTGGST 180 FVNSKNIVIW TIMVLFPIKI LTIIGLLFPT QSYVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-48 | 8 | 187 | 41 | 236 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027173104.1 | 1e-128 | auxin response factor 18-like | ||||
Swissprot | Q653H7 | 3e-87 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | A0A068U5G3 | 1e-161 | A0A068U5G3_COFCA; Uncharacterized protein | ||||
STRING | XP_008449245.1 | 1e-105 | (Cucumis melo) | ||||
STRING | XP_004143252.1 | 1e-105 | (Cucumis sativus) | ||||
STRING | XP_004156337.1 | 1e-105 | (Cucumis sativus) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G30080.1 | 5e-88 | auxin response factor 16 |
Publications ? help Back to Top | |||
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