PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g10250
Common NameGSCOC_T00031035001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 380aa    MW: 40564.9 Da    PI: 8.7484
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g10250genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.7e-11305350655
                  HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  +++Er RR ri  ++ +L++l+P+     +k  s a++L +Av++Ik Lq
  Cc03_g10250 305 SIAERERRTRISGKLKKLQDLVPNM----DKQTSYADMLDLAVQHIKGLQ 350
                  689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.005299349IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.85E-15302364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.26E-11303354No hitNo description
Gene3DG3DSA:4.10.280.103.7E-14304363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-8305350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.7E-13305355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0005829Cellular Componentcytosol
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MYPSSTSSSS QGSLGPNGGS NTGGLIRYGS APSSLLATTV DSVTNPSSRE LSALGSSHNL  60
HIGPTSSSSS RFFPSSETSS LTSESTCKTS NSNPREKGPN ISSGLHRAFG FKQDNHQGSI  120
GGGAGGAGMV SSSSSSTATT ASPLVRHSSS PPGFLNHLTH ACASNEDNGF PIARTHDISR  180
LNSQLSFTHQ ETLSQISEET ENVDNGLNAE NEKRKSAHTY SNVSYGVGPW EDANTIMFSM  240
GPTSKRAKNM SGDVVNLNSM ETQFQFSMPQ TMLDMSSMDK LLNIPQDSVP CKIRAKRGCA  300
THPRSIAERE RRTRISGKLK KLQDLVPNMD KQTSYADMLD LAVQHIKGLQ NQVQRLHKEL  360
ENCTCGCRKP QDSCRGGKS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027117036.10.0transcription factor bHLH128-like isoform X1
TrEMBLA0A068UP760.0A0A068UP76_COFCA; Uncharacterized protein
STRINGcassava4.1_010829m1e-114(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA64552328
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05805.18e-67bHLH family protein