PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g08510

Common Name

GSCOC_T00033272001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

HSF

Protein Properties

Length: 489aa MW: 54262.3 Da PI: 5.4864

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g08510	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.9	7.6e-34	23	113	2	101
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl k+y++++d+++++++ ws + +sf+v+++ efa+ +Lp+yFkh+nf+SF+RQLn+YgF+k++ e+ weF++++F k+kk+ll++i+ Cc03_g08510 23 FLLKTYDMVDDSSTDDIVAWSLTRKSFIVWNPPEFARLLLPTYFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEEFVKDKKHLLKNIH 110 9******************888*************************************999.........****************** PP XXX CS HSF_DNA-bind 99 rkk 101 r+k Cc03_g08510 111 RRK 113 *98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00415	6.7E-59	19	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	1.9E-33	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:1.10.10.10	3.4E-36	19	112	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	8.7E-30	23	112	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-18	23	46	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-18	61	73	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	62	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	2.8E-18	74	86	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 489 aa Download sequence Send to blast
MEAAAAGLIS APGGGGGAGP APFLLKTYDM VDDSSTDDIV AWSLTRKSFI VWNPPEFARL 60 LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DKKHLLKNIH RRKPIHSHSN 120 PQGTVVDPER TAFEEEIDKL SREKAVLEGN VLRFKQQQST AKVQLEDLTQ RLSGMEKRQD 180 NLLTFLENAV QKPCFVELLS QKLESMDVSA YNKKRRLPQV DQTQYVQENM MVDDHSSSRP 240 EFGNNSIPQD FCNKLTLDLS PAVSDINLLS QSTQSSNEDG EISPKRISEG WPKDVQKCGE 300 TLYAPETLDL SDTGTSFGLK VDSPLPHKAA DAKSPQLHSF QPCLTSSEDG DGHISCHLNL 360 SLASSALPIG RSQSSAKVDH VVEETGKSSE ANLNADGNEA DLSIPMESRK HPDGDTTLSS 420 SQNKQQGPAT QARVNDVFWE QFLTEKPGSM DNEEASSNHR ASPYDEQEHK KLGRGLPRSI 480 KSAEHLSL*

Sequence ? help Back to Top

Protein Sequence Length: 489 aa Download sequence Send to blast

MEAAAAGLIS APGGGGGAGP APFLLKTYDM VDDSSTDDIV AWSLTRKSFI VWNPPEFARL  60
LLPTYFKHNN FSSFIRQLNT YGFRKIDPER WEFANEEFVK DKKHLLKNIH RRKPIHSHSN  120
PQGTVVDPER TAFEEEIDKL SREKAVLEGN VLRFKQQQST AKVQLEDLTQ RLSGMEKRQD  180
NLLTFLENAV QKPCFVELLS QKLESMDVSA YNKKRRLPQV DQTQYVQENM MVDDHSSSRP  240
EFGNNSIPQD FCNKLTLDLS PAVSDINLLS QSTQSSNEDG EISPKRISEG WPKDVQKCGE  300
TLYAPETLDL SDTGTSFGLK VDSPLPHKAA DAKSPQLHSF QPCLTSSEDG DGHISCHLNL  360
SLASSALPIG RSQSSAKVDH VVEETGKSSE ANLNADGNEA DLSIPMESRK HPDGDTTLSS  420
SQNKQQGPAT QARVNDVFWE QFLTEKPGSM DNEEASSNHR ASPYDEQEHK KLGRGLPRSI  480
KSAEHLSL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	1e-21	7	112	10	129	Heat shock factor protein 1
5d5v_B	1e-21	7	112	10	129	Heat shock factor protein 1
5d5v_D	1e-21	7	112	10	129	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027116888.1	0.0	heat stress transcription factor A-5-like
Swissprot	Q94BZ5	1e-155	HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBL	A0A068URR6	0.0	A0A068URR6_COFCA; Uncharacterized protein
STRING	cassava4.1_006311m	0.0	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9461	21	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13980.1	1e-157	HSF family protein

Publications ? help Back to Top
Reňák D,Gibalová A,Solcová K,Honys D A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein. Plant Cell Environ., 2014. 37(3): p. 670-83 [PMID:23961845]