PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g07780

Common Name

GSCOC_T00026642001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

G2-like

Protein Properties

Length: 326aa MW: 35062.7 Da PI: 7.1536

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g07780	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	108.8	2.8e-34	65	119	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLHerFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl Cc03_g07780 65 KPRLRWTAELHERFVDAVTQLGGPDKATPKTIMRTMGVKGLTLYHLKSHLQKYRL 119 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-33	62	120	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.095	62	122	IPR017930	Myb domain
SuperFamily	SSF46689	2.51E-17	64	120	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-24	65	120	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	67	118	IPR001005	SANT/Myb domain
Pfam	PF14379	8.2E-27	163	209	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009567	Biological Process	double fertilization forming a zygote and endosperm
GO:0010628	Biological Process	positive regulation of gene expression
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MYSSARMPIV QTLPLEAASG GGAGAGAGGG DYHIHHHHHH GGPGMSLDGT NLPGDACLVL 60 TTDPKPRLRW TAELHERFVD AVTQLGGPDK ATPKTIMRTM GVKGLTLYHL KSHLQKYRLG 120 KQACKETTEN SKDASCVAES QDTGSSTCAS SRMIAQDIND GYQVTEALRV QMEVQRRLHE 180 QLEVQRRLQL RIEAQGKYLQ SILEKACKAL NDHAVASAGL EAAREELSEL AIKVASDCQG 240 MTSVPPLSEV APGMENKTPS NLPARIGDCS IDSCLTSNES PVSPVGDGSQ AAALKKRARP 300 VFGNRESLHF DNSMRQVEWM MTNIG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	65	121	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027116786.1	0.0	protein PHR1-LIKE 3-like
Swissprot	Q8LAJ7	1e-129	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A068TU04	0.0	A0A068TU04_COFCA; Uncharacterized protein
STRING	XP_006493809.1	1e-165	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3791	23	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	1e-119	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]