PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g04280
Common NameGSCOC_T00026138001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 363aa    MW: 41510.3 Da    PI: 4.5861
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g04280genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.19.1e-36441352102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++ ws+ +nsf+v+d+++fa ++Lp+yFkh+nf+SFvRQLn+YgF+kv+ e+         weF+++ F kg+++ll++++
   Cc03_g04280  44 FLTKTYDLVDDPSTDHIVCWSKGNNSFIVWDPQTFAMNLLPRYFKHNNFSSFVRQLNTYGFRKVDAEK---------WEFANEGFLKGQRHLLRNVR 131
                   9****************************************************************998.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k+
   Cc03_g04280 132 RRKT 135
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.7E-3937127IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.27E-3539133IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.7E-6140133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-204467IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.0E-3144133IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-208294IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434083107IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.0E-2095107IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MNPLGSSVKE EFPAGSSSWY SDETFSSATP QPMEGLRESG PPPFLTKTYD LVDDPSTDHI  60
VCWSKGNNSF IVWDPQTFAM NLLPRYFKHN NFSSFVRQLN TYGFRKVDAE KWEFANEGFL  120
KGQRHLLRNV RRRKTPPHLQ SSNPNLESCL EVGRFGLDVE VDRLRRDKQV LMLELVRLRQ  180
QQQNTKAYLK TMEQRLRGTE NEQQQMMTFL ARAIQNPRIL EQLVQQKDKR KELEEAIGNK  240
RRRPIDKGPS FSVGVGEFGQ EGEEVNDYVK LECQDYGHDL TGLTDFELNT LAINMQEPTP  300
PPMNLEEEYV GKDDDSFDDG FWDGLIHEGI ENDIGLRGGE GEDLEDLDLL TDQLGFLGSN  360
PP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-273913515122Heat shock factor protein 1
5d5u_B1e-273913524131Heat shock factor protein 1
5d5v_B1e-273913524131Heat shock factor protein 1
5d5v_D1e-273913524131Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1228242KRKELEEAIGNKRRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115724.10.0heat stress transcription factor A-7a-like
SwissprotQ9LUH81e-121HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A068TT320.0A0A068TT32_COFCA; Uncharacterized protein
STRINGcassava4.1_029306m1e-150(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57224113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-115heat shock transcription factor A6B