PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc03_g03300 | ||||||||
Common Name | GSCOC_T00026014001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GRAS | ||||||||
Protein Properties | Length: 475aa MW: 52927.4 Da PI: 7.2939 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 272.8 | 1.1e-83 | 105 | 473 | 4 | 374 |
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.fsev...sPilkfshl 96 lL ++A +s++++ a++lL+ ++ as +g+p+qR++ yf+eAL+++++ ++ e+ + p + ++ +++e++ +l+ + e+ P+ +++++ Cc03_g03300 105 LLQAAAFNFSNQQFVHARNLLNICQDSASLNGNPIQRVVYYFVEALQEKITMeTGGEVLQEKPEGNRRDLTVEEAFLSLHPaLMEChakLPFCRITQF 202 344555567888888************************************944445554444444443333333333322565552237******** PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlelee 193 ta qaIl+ v +++r+H iD++i+ G+QW L+qaLa+R e p l+iT+vg+ ske++ee+g++L++fA++l++pf f++ v+++l++++ Cc03_g03300 203 TAIQAILDNVGSAKRIHLIDLGIKCGTQWSVLMQALANRHECPLeLLKITAVGP----SKEMIEEIGKQLSSFAASLNIPFAFRI-VVSDLQNVDQYL 295 ****************************************6665499*******....**************************9.7999******** PP GRAS 194 LrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellg 291 +++ +E++a+ + l++ +ll+ +++les +L+++k+l+P+v+v++e ea++n++ F++rf +l++ +alfd+le+ + r+s r+ +E ++l+ Cc03_g03300 296 FQLAANEVVAIYSELRMASLLAWPHHLES----LLSTIKKLRPRVMVMIEIEANTNAPLFMDRFNASLSVSAALFDCLESCMDRDSPCRAIIEGMFLR 389 *********************99999999....***************************************************************** PP GRAS 292 reivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 + i+ +++ +g+e+++r+e+ + Wr+ l+++G+ +++ls+ a +qa+l+ + + + ++e + + + +gWk+ p+ ++S+W+ Cc03_g03300 390 EGIQYLITSRGKESIHRQESIGFWRAFLKRFGMVEIALSNWAFCQANLVAKSNPcWSSCTLEVNGKGMAIGWKGTPIHMLSVWK 473 ******************************************************9999*************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 39.52 | 76 | 452 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 3.9E-81 | 105 | 473 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
Sequence ? help Back to Top |
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Protein Sequence Length: 475 aa Download sequence Send to blast |
MAPQHEEITK GARTTVPISF FAEAKNKNQF LPSASLHLIK KHHESKVMPE QSPTSEPSNI 60 SCSLSLELST VDIIKMAKKI GSGDLSYVKS AASPENYKDF ELALLLQAAA FNFSNQQFVH 120 ARNLLNICQD SASLNGNPIQ RVVYYFVEAL QEKITMETGG EVLQEKPEGN RRDLTVEEAF 180 LSLHPALMEC HAKLPFCRIT QFTAIQAILD NVGSAKRIHL IDLGIKCGTQ WSVLMQALAN 240 RHECPLELLK ITAVGPSKEM IEEIGKQLSS FAASLNIPFA FRIVVSDLQN VDQYLFQLAA 300 NEVVAIYSEL RMASLLAWPH HLESLLSTIK KLRPRVMVMI EIEANTNAPL FMDRFNASLS 360 VSAALFDCLE SCMDRDSPCR AIIEGMFLRE GIQYLITSRG KESIHRQESI GFWRAFLKRF 420 GMVEIALSNW AFCQANLVAK SNPCWSSCTL EVNGKGMAIG WKGTPIHMLS VWKC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 2e-37 | 131 | 473 | 32 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027120841.1 | 0.0 | DELLA protein RGL2-like | ||||
TrEMBL | A0A068TRX1 | 0.0 | A0A068TRX1_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8500 | 17 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03450.1 | 5e-47 | RGA-like 2 |