PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g02110
Common NameGSCOC_T00025846001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 338aa    MW: 37200.6 Da    PI: 4.9306
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g02110genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2569.8e-185098355
          AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 + GVr+++ +gr++AeIrdp++   + r++lg+f+ta+eAa a+++a+++++g
  Cc03_g02110 50 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAQEAALAYDRAALSMKG 98
                 56******.**********965...5************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.02E-2849105No hitNo description
PROSITE profilePS5103220.58749106IPR001471AP2/ERF domain
SMARTSM003805.3E-3349112IPR001471AP2/ERF domain
PRINTSPR003671.2E-75061IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.1E-2850106IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2050107IPR016177DNA-binding domain
PfamPF008473.9E-115298IPR001471AP2/ERF domain
PRINTSPR003671.2E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010102Biological Processlateral root morphogenesis
GO:0010432Biological Processbract development
GO:0010451Biological Processfloral meristem growth
GO:0010582Biological Processfloral meristem determinacy
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MSTSKTPEKP FNLYEPILTQ TGFTLLQRNT SVSQPSEKRG RRKQAEPGRF LGVRRRPWGR  60
YAAEIRDPTT KERHWLGTFD TAQEAALAYD RAALSMKGTQ ARTNFVYSDN TNFHSLISPF  120
DLQSVLQPSH LLTKNQNKQH DATKHTSSSS QAREHPISSD NDACSQSSYG SSPSENFFFS  180
SGSETNSGYL DCIVPDNCLK PPSHHKEYSN NSNADQTSVD QSNYSNLRVL ENQSHSDADV  240
TNVLPVDSTN PGNFSCYEGL NFGFLENEQS WEMNSCELSA VINNPLMGET GCMEGYDPTV  300
DNTSLESMAA ATSSAGFSSV FPPFAFGDVV DSGYPPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-2040105571Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00520DAPTransfer from AT5G18560Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118154.10.0ethylene-responsive transcription factor ERF086-like
TrEMBLA0A068TS670.0A0A068TS67_COFCA; Uncharacterized protein
STRINGEOY064471e-121(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93072125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18560.13e-63ERF family protein