PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g02100
Common NameGSCOC_T00025845001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C3H
Protein Properties Length: 494aa    MW: 51823.1 Da    PI: 8.2593
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g02100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.3e-125277227
                 -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                 +++ C +++rtG C yG+rC+F+H++
  Cc03_g02100 52 DQADCIYYLRTGLCGYGARCRFNHPR 77
                 6789********************96 PP
2zf-CCCH37.25e-1298122327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C+f++rtG Ck+G++Ck++H++
  Cc03_g02100  98 QPVCQFYMRTGNCKFGASCKYHHPR 122
                  689********************96 PP
3zf-CCCH34.14.5e-11143168227
                  -S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                  +++ C+++ +tG+CkyG +Ck++H++
  Cc03_g02100 143 GEKDCSYYVKTGQCKYGVTCKYHHPQ 168
                  7889********************97 PP
4zf-CCCH361.2e-11315341127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++C++++++G Ck+G++C+++H+p
  Cc03_g02100 315 PGQPECQYYMKYGDCKFGASCRYHHPP 341
                  5789*********************97 PP
5zf-CCCH31.14e-10364387427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C+++ ++G Ck+G++CkF H++
  Cc03_g02100 364 AVCSHYIQNGVCKFGPSCKFDHPM 387
                  78********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003569.3E-55077IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.8645078IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-95277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-65379IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-55677IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-795122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07995123IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-998122IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-698123IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.2E-5100122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.427141169IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-5141168IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-8143168IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6144169IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.2E-4147167IPR000571Zinc finger, CCCH-type
SMARTSM003565.5E-6314341IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.145314342IPR000571Zinc finger, CCCH-type
PfamPF006428.3E-9316341IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.53E-5318341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-4320341IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-5360387IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.004360388IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-6363390IPR000571Zinc finger, CCCH-type
PfamPF006427.1E-7364387IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.0E-5365385IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MERYSGTQAM EGAATADPVA EWTAPSGETG LEEPMWQLGL GGGPEPYPER PDQADCIYYL  60
RTGLCGYGAR CRFNHPRDRT AAMGARATAG EYPERVGQPV CQFYMRTGNC KFGASCKYHH  120
PRQGSGSQTP VNLNFFGYPL RPGEKDCSYY VKTGQCKYGV TCKYHHPQPA GVQMPAPAPG  180
PGPGPLPAPA TVPVPAIYPP VQSPSVQSSQ QYGVMTGNWP VPRPTILPGS YFPGTYGPML  240
LPPGMVPLPA WTSYPSPVSL AATASNQPAV GAGHIYGITQ LSPSAPAYTG QYLSIPPAAG  300
PSGSSQREHA FPERPGQPEC QYYMKYGDCK FGASCRYHHP PELSAQKSNP VLSPMGLPLR  360
PGAAVCSHYI QNGVCKFGPS CKFDHPMGTL SYSPSASSLA DMPVAPYPVG SSMGTLAPSS  420
SSSDLRPELI SGSSKDAFSS RMSSVSASSG SVGSLFSKSS IVPHSSTQQP GQGTSTSSGS  480
SSTVHGSEVR TSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027116055.10.0zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W911e-163C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLA0A068TRL90.0A0A068TRL9_COFCA; Uncharacterized protein
STRINGSolyc01g067550.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24122459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.31e-121C3H family protein