PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g01450
Common NameGSCOC_T00025757001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 261aa    MW: 28819.3 Da    PI: 8.5959
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g01450genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.55.3e-2175124255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+G+r+++ +g+W+AeIrdp     +  r++lg+f taeeAa+a+++a+k+++g
  Cc03_g01450  75 KYRGIRQRP-WGKWAAEIRDPQ----KgVRVWLGTFNTAEEAARAYDKAAKRIRG 124
                  8********.**********94....35************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.14E-3275131No hitNo description
PROSITE profilePS5103223.72375132IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.3E-3275132IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2275132IPR016177DNA-binding domain
SMARTSM003803.7E-3775138IPR001471AP2/ERF domain
PfamPF008472.5E-1475124IPR001471AP2/ERF domain
PRINTSPR003676.1E-127687IPR001471AP2/ERF domain
PRINTSPR003676.1E-1298114IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008219Biological Processcell death
GO:0009723Biological Processresponse to ethylene
GO:0009735Biological Processresponse to cytokinin
GO:0009753Biological Processresponse to jasmonic acid
GO:0010286Biological Processheat acclimation
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051707Biological Processresponse to other organism
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MCGGAIISGG SPINPGRKLT PKELWAEFDT ISPFWGFDPS GQAADTKATD KNKLPKKAGG  60
NQKAEKISQK PRKNKYRGIR QRPWGKWAAE IRDPQKGVRV WLGTFNTAEE AARAYDKAAK  120
RIRGDKAKLN FVADDQQPPT TPSQPTPPRQ PLAKRRCVTP EPPPAYYPQP DQEILESIGP  180
TPPVVDPGFQ PQPYYPSQVT DQDYQYGDQF SSLESFLGLE PETTTTATSQ FGGIAESDPV  240
DLWMMDDLVA TAQQPNNRLY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2176131359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00109PBMTransfer from AT3G16770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2787290.0KF278729.1 Coffea arabica ethylene response factor 1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115979.11e-175ethylene-responsive transcription factor RAP2-3-like isoform X1
RefseqXP_027121050.11e-175ethylene-responsive transcription factor RAP2-3-like isoform X1
TrEMBLA0A068TRG90.0A0A068TRG9_COFCA; Uncharacterized protein
STRINGGorai.011G193600.12e-72(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16770.14e-44ethylene-responsive element binding protein