PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g01230
Common NameGSCOC_T00025729001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ARR-B
Protein Properties Length: 676aa    MW: 73886.1 Da    PI: 6.5171
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g01230genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like91.38.2e-29217270155
      G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  kpr++W+ eLH++Fv av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl
  Cc03_g01230 217 KPRVVWSVELHQQFVAAVNQL-GIDKAVPKKILELMNVPGLTRENVASHLQKYRL 270
                  79*******************.********************************8 PP
2Response_reg76.11.3e-25371451109
                   EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS
  Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 
                   vl+vdD+p+ +++l+++l++  y ev+ +  +e al+ll++++  +D+++ D+ mp+mdG++ll++   e  +lp+i+++a ++++ + + +  Ga 
   Cc03_g01230  37 VLVVDDDPTCLRILEKMLRNCLY-EVTKCNRAEIALKLLRDNRngYDIVISDVHMPDMDGFKLLEQVGLEM-DLPVIMMSADDSKNVVMKGVTHGAC 131
                   89*********************.***************999999**********************6644.8************************ PP

                   EEEESS--HHHHHH CS
  Response_reg  96 dflsKpfdpeelvk 109
                   d+l Kp+ +e+l +
   Cc03_g01230 132 DYLIKPVRIEALKN 145
                   **********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.5E-18814667IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23007.0E-4234180No hitNo description
SuperFamilySSF521727.68E-3534158IPR011006CheY-like superfamily
SMARTSM004486.8E-3035147IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011041.78736151IPR001789Signal transduction response regulator, receiver domain
PfamPF000727.3E-2337145IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.80E-2738150No hitNo description
PROSITE profilePS5129410.896214273IPR017930Myb domain
SuperFamilySSF466895.02E-20215274IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.4E-30216275IPR009057Homeodomain-like
TIGRFAMsTIGR015579.6E-25217270IPR006447Myb domain, plants
PfamPF002499.7E-8219269IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0071368Biological Processcellular response to cytokinin stimulus
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 676 aa     Download sequence    Send to blast
MNLGGGQTAK AMSAPSSSAS LKSGDVVSDQ FPAGLRVLVV DDDPTCLRIL EKMLRNCLYE  60
VTKCNRAEIA LKLLRDNRNG YDIVISDVHM PDMDGFKLLE QVGLEMDLPV IMMSADDSKN  120
VVMKGVTHGA CDYLIKPVRI EALKNIWQHV VRKRKHEWKD KDFEQSGSAE EGERLVKPLE  180
DVDYSSSATE GNWKTSKRRK DEEDEPEEKD DTSSLKKPRV VWSVELHQQF VAAVNQLGID  240
KAVPKKILEL MNVPGLTREN VASHLQKYRL YLRRLSGVSS HQNGLNSSFM GTPEATFASM  300
SSLGGLDLQA LAATGHIPAQ SLASLQALGR PTTKNSISMP MVDQRNLFSF ETPKLRFGDG  360
QQQLNNNSKQ INLLHGIPTN MEPKQLASLN QSAQTFGGLN MQVNPQASQS SSLLVQMSHP  420
MSRTQMLNEN KGNHVPRLQS SIGQPILSNG IHSGVLSRNG IVDNVRGAVY NPVSQASSLV  480
DFSINKSAEL PGNSFAQVSN SGISSLTSKG IIQEEVSSEV KGSRGFIHSY DIFNELQQHK  540
AQDWGMQNVG STFDASQHSA LQGSLDVSPS SLVQQGFSSS QKDRNVSIGD AIFSGGEGAH  600
CNNSKFGQQF NSFVADNTLR VKAERLPDSG CQNNLFPQQF GQEDLMSALL KQQEGIGSVE  660
SEFGFDGYPL DKFPV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-22213276164ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the expression of nuclear genes for components of mitochondrial complex I. Promotes cytokinin-mediated leaf longevity. Involved in the ethylene signaling pathway in an ETR1-dependent manner and in the cytokinin signaling pathway. {ECO:0000269|PubMed:11370868, ECO:0000269|PubMed:11574878, ECO:0000269|PubMed:15282545, ECO:0000269|PubMed:16407152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115945.10.0two-component response regulator ARR2-like
SwissprotQ9ZWJ90.0ARR2_ARATH; Two-component response regulator ARR2
TrEMBLA0A068TS710.0A0A068TS71_COFCA; Two-component response regulator
STRINGEMJ263540.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31912450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.10.0response regulator 2
Publications ? help Back to Top
  1. Takahashi N, et al.
    Cytokinins control endocycle onset by promoting the expression of an APC/C activator in Arabidopsis roots.
    Curr. Biol., 2013. 23(18): p. 1812-7
    [PMID:24035544]
  2. Ge XM, et al.
    Heterotrimeric G protein mediates ethylene-induced stomatal closure via hydrogen peroxide synthesis in Arabidopsis.
    Plant J., 2015. 82(1): p. 138-50
    [PMID:25704455]
  3. Takahashi N,Umeda M
    Cytokinins promote onset of endoreplication by controlling cell cycle machinery.
    Plant Signal Behav, 2014. 9(8): p. e29396
    [PMID:25763620]
  4. Kobayashi K, et al.
    Shoot Removal Induces Chloroplast Development in Roots via Cytokinin Signaling.
    Plant Physiol., 2017. 173(4): p. 2340-2355
    [PMID:28193764]
  5. Arnaud D, et al.
    Cytokinin-Mediated Regulation of Reactive Oxygen Species Homeostasis Modulates Stomatal Immunity in Arabidopsis.
    Plant Cell, 2017. 29(3): p. 543-559
    [PMID:28254779]
  6. Zhang TQ, et al.
    A Two-Step Model for de Novo Activation of WUSCHEL during Plant Shoot Regeneration.
    Plant Cell, 2017. 29(5): p. 1073-1087
    [PMID:28389585]
  7. Meng WJ, et al.
    Type-B ARABIDOPSIS RESPONSE REGULATORs Specify the Shoot Stem Cell Niche by Dual Regulation of WUSCHEL.
    Plant Cell, 2017. 29(6): p. 1357-1372
    [PMID:28576846]
  8. Zhang F,May A,Irish VF
    Type-B ARABIDOPSIS RESPONSE REGULATORs Directly Activate WUSCHEL.
    Trends Plant Sci., 2017. 22(10): p. 815-817
    [PMID:28886911]
  9. Takatsuka H,Higaki T,Umeda M
    Actin Reorganization Triggers Rapid Cell Elongation in Roots.
    Plant Physiol., 2018. 178(3): p. 1130-1141
    [PMID:30185441]