PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g01140
Common NameGSCOC_T00025718001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 358aa    MW: 38732 Da    PI: 5.9621
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g01140genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.41.2e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rgrW +eEde+l++++kq G g+W++ ++  g+ R++k+c++rw +yl
      Cc03_g01140 14 RGRWAAEEDEKLINYIKQNGEGSWRSLPKNAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding53.27.1e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+e ++++++  G++ W++Ia++++ gRt++++k++w+++l
      Cc03_g01140  67 RGNFTREEEETIINLHRSVGNK-WSLIASKLP-GRTDNEVKNYWNSHL 112
                      89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.4E-22564IPR009057Homeodomain-like
PROSITE profilePS5129416.447961IPR017930Myb domain
SuperFamilySSF466892.81E-2711108IPR009057Homeodomain-like
SMARTSM007174.9E-111363IPR001005SANT/Myb domain
PfamPF002494.0E-141461IPR001005SANT/Myb domain
CDDcd001676.56E-101661No hitNo description
PROSITE profilePS5129425.8762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.4E-2565116IPR009057Homeodomain-like
SMARTSM007173.6E-1666114IPR001005SANT/Myb domain
PfamPF002493.9E-1567112IPR001005SANT/Myb domain
CDDcd001674.39E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGRAPCCEKV GLRRGRWAAE EDEKLINYIK QNGEGSWRSL PKNAGLLRCG KSCRLRWINY  60
LRADLKRGNF TREEEETIIN LHRSVGNKWS LIASKLPGRT DNEVKNYWNS HLSRKIYSFR  120
SSDGSSVTTL DMVNIPSKSK RKGGRVSRAV AKKYSMHPIT KAPITTATNE TSSSSKISST  180
SGVQEATTAA QNAQVGMVEA TTHGVPESAA AAEKVSDDAA VGAVEESGKH QLQPMANNNY  240
DYDESEGGCI NSMHDIRCDG GEGCARALLV PSPEKLEGEK GVAGPNDELD DVTLLLESVL  300
ESELMDLSEI SVHTGDTENE SIMYPESASM NRDSDSGASN SNSDTGDGLI RALGSRR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A9e-25121165108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115935.10.0transcription factor MYB11-like isoform X1
TrEMBLA0A068TR640.0A0A068TR64_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.19e-71myb domain protein 12