PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc03_g00940
Common NameGSCOC_T00025693001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 596aa    MW: 67094.7 Da    PI: 6.5691
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc03_g00940genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS288.42e-882225931374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvsely.kalppsetseknsseelaalkl.......fsevsPi 90 
                  lv+ Ll+ Ae v ++++e+a +lL +  +l+s++g++++Rl+ yf  AL++r+ r++ ++  k l   ++      + l  ++         ++  P+
  Cc03_g00940 222 LVQYLLASAELVGKKQFERAGKLLLECDKLSSNQGNAIERLVYYFSGALHERIDRETGTVTpKGLGKMQS-----LDMLDTMSGitpdiiaMQKSVPF 314
                  6899***************************************************443333033322222.....22222221112233469****** PP

         GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp.egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle 187
                   ++s+++  q Il+ v+ ++++Hi+D++i  G+Q+  L+qaLa+R+ ++   l++T++g    +sk ++eetg+rLa+fA++ +++f+ n++++ ++ 
  Cc03_g00940 315 SQVSQFAGAQGILDHVADATKIHIVDLEIRTGMQYTILMQALATRSqNPLEYLKVTAIGT---KSKAKIEETGRRLASFARAWNLKFSLNIVMVADIM 409
                  **********************************************455569********...689******************************** PP

         GRAS 188 dleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285
                  dl+ + +++  +Ea+aV + + l  + +++  les    ++++vk ++P+v++v+e e +hns+ F++rf+eal yy a++dsle  l ++s++r++v
  Cc03_g00940 410 DLNENLFEIYADEAVAVWVEYYLTFMIRRQDILES----LMNVVKAINPRVMIVTEVEGNHNSPVFVTRFIEALFYYGAFYDSLEDCLKHDSKNRMFV 503
                  *********************99999977766666....*********************************************************** PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  E ++++++++n+va+eg+er+ rh  ++ W++ + ++G+ +v+ls + + qa+lll++++ +   ++  + + l++gWk+ p+ s+SaW+
  Cc03_g00940 504 ESVYFSQALRNIVATEGEERTIRHVAVNVWKAFFARFGMVQVELSMSSMYQANLLLKNFDcGSSCTLAMDGKGLIIGWKGTPIHSLSAWK 593
                  ************************************************************9999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098541.967196572IPR005202Transcription factor GRAS
PfamPF035146.9E-86222593IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MEMFHFDHFD FLGVSGKYGS TKGFQFEDHA KEEKRNHLIT NNDHDREASR GIGSFYPGAP  60
GSNQVHCNTA DGVIFSKLHQ EQQLKQLSGF ACVNDLYFDM EIPPFQSCEE AIKKLVDDVA  120
FEGSEPNDAK KERPYAGSLQ ILKNYRKRFR KLNVEKTDFP SYLGCTFITS QKLSTDAILK  180
LAAQNFIRSS SEGTSSEFFV LNHPYASSFV GLGEEDIKGV QLVQYLLASA ELVGKKQFER  240
AGKLLLECDK LSSNQGNAIE RLVYYFSGAL HERIDRETGT VTPKGLGKMQ SLDMLDTMSG  300
ITPDIIAMQK SVPFSQVSQF AGAQGILDHV ADATKIHIVD LEIRTGMQYT ILMQALATRS  360
QNPLEYLKVT AIGTKSKAKI EETGRRLASF ARAWNLKFSL NIVMVADIMD LNENLFEIYA  420
DEAVAVWVEY YLTFMIRRQD ILESLMNVVK AINPRVMIVT EVEGNHNSPV FVTRFIEALF  480
YYGAFYDSLE DCLKHDSKNR MFVESVYFSQ ALRNIVATEG EERTIRHVAV NVWKAFFARF  540
GMVQVELSMS SMYQANLLLK NFDCGSSCTL AMDGKGLIIG WKGTPIHSLS AWKFR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-4025259333375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027118132.10.0DELLA protein RGL2-like
TrEMBLA0A068TR450.0A0A068TR45_COFCA; Uncharacterized protein
STRINGEMJ259710.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA34272149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.11e-58RGA-like 2