PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc03_g00210

Common Name

GSCOC_T00025599001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

SBP

Protein Properties

Length: 985aa MW: 109622 Da PI: 7.0481

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc03_g00210	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	128.8	2e-40	133	210	1	78
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +Cqve+C+adls+ak+yhrrhkvC+vhska+ +lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++ Cc03_g00210 133 VCQVEDCRADLSNAKDYHRRHKVCDVHSKATRALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNRRRRKTHP 210 6**************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	2.2E-32	127	195	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.223	131	208	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	1.44E-37	132	213	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	1.7E-28	134	207	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF48403	1.55E-9	708	864	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	3.0E-8	763	867	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.38E-8	763	864	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0016021	Cellular Component	integral component of membrane
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 985 aa Download sequence Send to blast
MEAKIGGKAY HYYGPVVSDL KALGKRTVEW DLNDWKWDGD LFTAAPLNSL PSDCRSRQFF 60 PTGSEIPTNS LRELEKRRRG VDGEDEELTD EAGSLHLKLG GHLYPITEGD VDKWEGKSGK 120 KTKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDVHS KATRALVGNV MQRFCQQCSR 180 FHVLQEFDEG KRSCRRRLAG HNRRRRKTHP ESVESGTPAT DERGSNYLLI SLLRILSNIH 240 SNNSSDQTKD QDLLSHLLRS LAGLAGIVNE KNLTGLLPGS QDLQNAGTSD GNPAKDPSRN 300 MLQYSTMPAS ESAQKRILGD DDNGIVRISS PAQSTLLLPP IEGILTKASS LGTTVGKTRM 360 NNIDLNNAYD DSQDCIENLQ SSDCPTHIGK ASSGCPLWVY QDPYKSSPPQ PSGNSGSTST 420 QSPSSSSGEA QSRTDRIVFK LFGKDPSDFP LALRKQILDW LSHSPSDIES YIRPGCVILT 480 IYIRMDKSTW EELCYDLTSS LRRLLDASTD SFWKSGWIYA RVRHRVAFVY DGCIVLDTPL 540 PHKSQKSCRI LNINPIAVCA SGEVKFSVRG INLSQPTTRL LCALEGKYLA QERCADVIGG 600 ADLYIEHAEI QTLNFTCTVP DVTGRGFIEV EDHGLSSSFF PFIVAENDVC SEISTLESVI 660 EAAEISNGLH GDNQNLEDRN QALDFIHEIG WLLHRSQLKF RLGQQDPNLD TFPFQRFRWL 720 IEFSVEHDWC AVVKLLLNVL FNKLMGEEKR SSIEDALLDI GLLHRAVRRN CRSMVEVLLR 780 YHPDADLNKL SPIRYVFRPD VKGPAGLTPL HIAAGRDGAE HVLDALTDDP GLVGVEAWRS 840 ARDSTGLTPN DYACLRGHYS YIHLVQKKIN KKSGSQHVVL EIPDGHLESS MNQKTADENK 900 ARKVSSLSTE MSVVKPSHVH CRQCEQKLAY GRNRTSLAIY RPAMLSMVAI AAVCVCVALL 960 FKSSPEVDYV YGPFRWEYLE YGSS*

Sequence ? help Back to Top

Protein Sequence Length: 985 aa Download sequence Send to blast

MEAKIGGKAY HYYGPVVSDL KALGKRTVEW DLNDWKWDGD LFTAAPLNSL PSDCRSRQFF  60
PTGSEIPTNS LRELEKRRRG VDGEDEELTD EAGSLHLKLG GHLYPITEGD VDKWEGKSGK  120
KTKVVGPSSN RAVCQVEDCR ADLSNAKDYH RRHKVCDVHS KATRALVGNV MQRFCQQCSR  180
FHVLQEFDEG KRSCRRRLAG HNRRRRKTHP ESVESGTPAT DERGSNYLLI SLLRILSNIH  240
SNNSSDQTKD QDLLSHLLRS LAGLAGIVNE KNLTGLLPGS QDLQNAGTSD GNPAKDPSRN  300
MLQYSTMPAS ESAQKRILGD DDNGIVRISS PAQSTLLLPP IEGILTKASS LGTTVGKTRM  360
NNIDLNNAYD DSQDCIENLQ SSDCPTHIGK ASSGCPLWVY QDPYKSSPPQ PSGNSGSTST  420
QSPSSSSGEA QSRTDRIVFK LFGKDPSDFP LALRKQILDW LSHSPSDIES YIRPGCVILT  480
IYIRMDKSTW EELCYDLTSS LRRLLDASTD SFWKSGWIYA RVRHRVAFVY DGCIVLDTPL  540
PHKSQKSCRI LNINPIAVCA SGEVKFSVRG INLSQPTTRL LCALEGKYLA QERCADVIGG  600
ADLYIEHAEI QTLNFTCTVP DVTGRGFIEV EDHGLSSSFF PFIVAENDVC SEISTLESVI  660
EAAEISNGLH GDNQNLEDRN QALDFIHEIG WLLHRSQLKF RLGQQDPNLD TFPFQRFRWL  720
IEFSVEHDWC AVVKLLLNVL FNKLMGEEKR SSIEDALLDI GLLHRAVRRN CRSMVEVLLR  780
YHPDADLNKL SPIRYVFRPD VKGPAGLTPL HIAAGRDGAE HVLDALTDDP GLVGVEAWRS  840
ARDSTGLTPN DYACLRGHYS YIHLVQKKIN KKSGSQHVVL EIPDGHLESS MNQKTADENK  900
ARKVSSLSTE MSVVKPSHVH CRQCEQKLAY GRNRTSLAIY RPAMLSMVAI AAVCVCVALL  960
FKSSPEVDYV YGPFRWEYLE YGSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	5e-30	128	207	5	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269\|PubMed:10524240, ECO:0000269\|PubMed:16095614}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00633	PBM	Transfer from PK06791.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115807.1	0.0	LOW QUALITY PROTEIN: squamosa promoter-binding-like protein 1
Swissprot	Q9SMX9	0.0	SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBL	A0A068TRT4	0.0	A0A068TRT4_COFCA; Uncharacterized protein
STRING	POPTR_0008s09810.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1871	24	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47070.1	0.0	squamosa promoter binding protein-like 1

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Chao LM, et al. Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage. Mol Plant, 2017. 10(5): p. 735-748 [PMID:28400323]