PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g39630

Common Name

GSCOC_T00027690001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

Dof

Protein Properties

Length: 290aa MW: 31489.1 Da PI: 9.7125

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g39630	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.2	2e-39	39	99	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 k++al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+ Cc02_g39630 39 KDQALNCPRCHSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGTLRNVPVGGGSRKNKRST 99 7899******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	8.0E-27	32	91	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	7.8E-34	40	97	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.022	43	97	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	45	81	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009639	Biological Process	response to red or far red light
GO:0009845	Biological Process	seed germination
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MDTTNQWTQE IGGLKSMGEI ASSPCSRPVV QERKVRPQKD QALNCPRCHS TNTKFCYYNN 60 YSLTQPRYFC KTCRRYWTEG GTLRNVPVGG GSRKNKRSTT TNTSSHKHPD LNPPTITHFA 120 SQNPKIHPQG QDLNLGFPAS QDYHGHASKI FELPKVDVSG CNQLKSSSSA TSAPFAALEF 180 LRTGIVSRGM NSFITSTIPA ADLNALYNAQ GFQFQDLKPA AGVSFSVDHH GLGNRFVNAP 240 SGIQENGARL MFPFGAVKQG TSTSAVDQNK GQSDSSGYWN GMLGGGSWM*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027115492.1	0.0	dof zinc finger protein DOF2.5
Refseq	XP_027163337.1	0.0	dof zinc finger protein DOF2.5
Refseq	XP_027163338.1	0.0	dof zinc finger protein DOF2.5
TrEMBL	A0A068UJL6	0.0	A0A068UJL6_COFCA; Uncharacterized protein
STRING	EOX95655	1e-104	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA88	24	419

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61850.4	4e-61	Dof family protein