PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g39490 | ||||||||
Common Name | GSCOC_T00027708001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 264aa MW: 29384.5 Da PI: 9.9101 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.7 | 1.4e-18 | 103 | 153 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + ++GVr ++ +g+Wv+eIr+p++ + r++lg+f ++e+Aa+a++ a+ +l+g Cc02_g39490 103 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPSPEMAARAYDVAAYCLKG 153 579****887.**********843...6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.4E-12 | 103 | 153 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-34 | 104 | 167 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.6E-31 | 104 | 162 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 104 | 163 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.512 | 104 | 161 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-12 | 105 | 116 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.66E-29 | 105 | 163 | No hit | No description |
PRINTS | PR00367 | 6.3E-12 | 143 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 264 aa Download sequence Send to blast |
MEKGVFVRFK KKMSGKTRCK HKYRAAMDFM YWLHAQLAKL WFNCWLIMEM LLQQPPAPPC 60 INEDDLAPSS SGSTTTTTTP TAASSSRSDT SSSSAARGGT RHPVFRGVRK RRWGKWVSEI 120 REPRKKSRIW LGSFPSPEMA ARAYDVAAYC LKGPKAQLNF PDDIQLLPRP LTTTARDIQA 180 AASLAARVAM AEGKKTATIG SDDFWRDIEL PELIEAWPGE NDNSTSVAVR RDYVWELRYW 240 SASSSLSSCS GMFSGDIATS PME* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-17 | 99 | 166 | 9 | 77 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00120 | DAP | Transfer from AT1G01250 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027115454.1 | 1e-106 | ethylene-responsive transcription factor ERF023-like | ||||
Refseq | XP_027162115.1 | 1e-106 | ethylene-responsive transcription factor ERF023-like | ||||
Swissprot | Q1ECI2 | 2e-49 | ERF23_ARATH; Ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A068UJF8 | 0.0 | A0A068UJF8_COFCA; Uncharacterized protein | ||||
STRING | Migut.N01538.1.p | 6e-59 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA13874 | 13 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01250.1 | 2e-45 | ERF family protein |
Publications ? help Back to Top | |||
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