PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g39490
Common NameGSCOC_T00027708001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family ERF
Protein Properties Length: 264aa    MW: 29384.5 Da    PI: 9.9101
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g39490genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-18103153155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr ++ +g+Wv+eIr+p++   + r++lg+f ++e+Aa+a++ a+ +l+g
  Cc02_g39490 103 PVFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPSPEMAARAYDVAAYCLKG 153
                  579****887.**********843...6*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.4E-12103153IPR001471AP2/ERF domain
SMARTSM003801.2E-34104167IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.6E-31104162IPR001471AP2/ERF domain
SuperFamilySSF541711.7E-21104163IPR016177DNA-binding domain
PROSITE profilePS5103223.512104161IPR001471AP2/ERF domain
PRINTSPR003676.3E-12105116IPR001471AP2/ERF domain
CDDcd000181.66E-29105163No hitNo description
PRINTSPR003676.3E-12143163IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEKGVFVRFK KKMSGKTRCK HKYRAAMDFM YWLHAQLAKL WFNCWLIMEM LLQQPPAPPC  60
INEDDLAPSS SGSTTTTTTP TAASSSRSDT SSSSAARGGT RHPVFRGVRK RRWGKWVSEI  120
REPRKKSRIW LGSFPSPEMA ARAYDVAAYC LKGPKAQLNF PDDIQLLPRP LTTTARDIQA  180
AASLAARVAM AEGKKTATIG SDDFWRDIEL PELIEAWPGE NDNSTSVAVR RDYVWELRYW  240
SASSSLSSCS GMFSGDIATS PME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-1799166977Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00120DAPTransfer from AT1G01250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027115454.11e-106ethylene-responsive transcription factor ERF023-like
RefseqXP_027162115.11e-106ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI22e-49ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A068UJF80.0A0A068UJF8_COFCA; Uncharacterized protein
STRINGMigut.N01538.1.p6e-59(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA138741314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.12e-45ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]