PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g38950 | ||||||||
Common Name | GSCOC_T00027787001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | ERF | ||||||||
Protein Properties | Length: 318aa MW: 35688.5 Da PI: 4.3877 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.9e-19 | 92 | 140 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp r +r++lg+++taeeAa +++a+ +++g Cc02_g38950 92 YRGVRQRP-WGKWAAEIRDP---A-RkARIWLGTYDTAEEAAMVYDRAAIQIRG 140 9*******.**********8...2.35***********************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 2.4E-30 | 91 | 147 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 91 | 154 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.604 | 91 | 148 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.75E-22 | 91 | 147 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.31E-32 | 92 | 147 | No hit | No description |
PRINTS | PR00367 | 4.6E-11 | 92 | 103 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.8E-13 | 92 | 140 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.6E-11 | 114 | 130 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 318 aa Download sequence Send to blast |
MDTDKLSQPL RKTVHRKILD NTAINMPRVV RIQFTDCDAT DSSGDDDDDG RLLSPFFRPP 60 RIKKLLSEIV IEKKKYSCPR KATFVDEVKN AYRGVRQRPW GKWAAEIRDP ARKARIWLGT 120 YDTAEEAAMV YDRAAIQIRG PDALTNFIRP PEPERPDYTT TEEELAEVHA TSVSGYDSGK 180 ESENNNLCSP TSVLRFKDKH QPPQQNDHAS ASATKWAGDW RPVEPVGAES EAISNSPDDD 240 DSLLLDQCLL NEFFNLKSPS PLIYNEIIGH DDGVLELEEG NFDDDTPLDF GFGDDFGASC 300 GAWDVNDFLE DHQLLLV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-22 | 92 | 147 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-22 | 92 | 147 | 6 | 62 | ATERF1 |
3gcc_A | 2e-22 | 92 | 147 | 6 | 62 | ATERF1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027108508.1 | 0.0 | ethylene-responsive transcription factor CRF5-like | ||||
TrEMBL | A0A068UKJ3 | 0.0 | A0A068UKJ3_COFCA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA494 | 23 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27950.1 | 4e-35 | cytokinin response factor 4 |