PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g38910
Common NameGSCOC_T00027792001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 418aa    MW: 44424.3 Da    PI: 9.3162
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g38910genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_165.87.7e-21274336163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkrerrkq+NRe+ArrsR+RK+ae+eeL++kv++L+aeN +Lk+e+ +l++ +++lk e+
  Cc02_g38910 274 ERELKRERRKQSNRESARRSRLRKQAETEELAKKVQSLTAENLSLKSEIHKLTESSERLKLEN 336
                  89**********************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.3E-36193IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165969.8E-23131265No hitNo description
Gene3DG3DSA:1.20.5.1702.9E-17268333No hitNo description
PfamPF001702.2E-19274336IPR004827Basic-leucine zipper domain
SMARTSM003383.3E-19274338IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.128276339IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.0E-10277333No hitNo description
CDDcd147021.23E-19279327No hitNo description
PROSITE patternPS000360281296IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009737Biological Processresponse to abscisic acid
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MGNSDEAKSS KPEKSSSPAP DQANVHVYPD WAAMQAYYGP RVAVPPYFNS AVASGHPPHP  60
YMWGPAQPMM SPYGTPYAAI YPHGGVYAHP GVPLGSHANG HGVLPSPTVT EATAAVPLSL  120
DTPVKSSANT DKGFTNKLKG FDGLAMSIGN GSSDRAGAGS DHGISQSEDT EGSSDGSNGN  180
TTKVGQNNKK RSREGTPSDA GEGKNLTPKS PIRTGEVNGT SAKVMGMTVA TANEVEKVMG  240
SVLSPNMTST LELRNPSGGN MKTSPVSEAW LQNERELKRE RRKQSNRESA RRSRLRKQAE  300
TEELAKKVQS LTAENLSLKS EIHKLTESSE RLKLENATMM EKLKNPQLGQ TGNLSLSKFD  360
EMRLQPVGTA NLLARVNNSG SVDRNDEEGE VFENTKSGAK LRQLLDANPR TDAVAAG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1290296RRSRLRK
2290297RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00318DAPTransfer from AT2G46270Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0849711e-39AF084971.1 Catharanthus roseus G-box binding protein 1 (GBF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108499.10.0common plant regulatory factor 1-like isoform X5
SwissprotQ990891e-149CPRF1_PETCR; Common plant regulatory factor 1
TrEMBLA0A068UMB00.0A0A068UMB0_COFCA; Uncharacterized protein
STRINGXP_009765847.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31132447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.11e-120G-box binding factor 3
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]
  2. Feldbrügge M,Hahlbrock K,Weisshaar B
    The transcriptional regulator CPRF1: expression analysis and gene structure.
    Mol. Gen. Genet., 1996. 251(6): p. 619-27
    [PMID:8757392]