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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Cc02_g38720 | ||||||||
| Common Name | GSCOC_T00027821001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 261aa MW: 30038.7 Da PI: 8.3563 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
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| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 21.7 | 6.4e-07 | 57 | 90 | 2 | 35 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvC 35
+Y++YA++ GFsvr+++ +ks+ n++i+ ++f+
Cc02_g38720 57 CYSNYAHNKGFSVRRNRITKSRSNKSIIGQEFKY 90
7****************************99985 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 261 aa Download sequence Send to blast |
MERELGTECP MEQDQVDHDA AHGSMPEDST NEQIEPGKDV NLYVGMGFES LGDAFKCYSN 60 YAHNKGFSVR RNRITKSRSN KSIIGQEFKY KLQNNTWIQK VYSIRERWVP AFVHASFCAG 120 MSTTQRSESM NKFFKDYLNS STAMSKFVTQ YDRAIKARYD KEKEKNFNTK NTKPILKTLM 180 CFNDIMVRLQ ALSNKLDDLP YENEQANNLS ISQVDSHSEI HDLTQGQHIS KECNSIQPRN 240 SCIKRLSSHL TDEGWFRKVS * |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_027071220.1 | 5e-51 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| Refseq | XP_027099193.1 | 3e-52 | protein FAR1-RELATED SEQUENCE 5-like | ||||
| TrEMBL | A0A068UKD9 | 0.0 | A0A068UKD9_COFCA; Uncharacterized protein | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA645 | 8 | 60 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G38180.1 | 2e-18 | FAR1-related sequence 5 | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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