PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g37750
Common NameGSCOC_T00027948001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 314aa    MW: 34615 Da    PI: 7.3605
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g37750genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.5e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEde+l++++++ G g+W++ +r  g+ R++k+c++rw +yl
      Cc02_g37750 15 KGPWTPEEDEKLIEYINKNGHGSWRSLPRNAGLLRCGKSCRLRWTNYL 62
                     79******************************99************97 PP

2Myb_DNA-binding47.34.9e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E++l ++++  lG++ W++Ia+ ++ gRt++++k+ w+++l
      Cc02_g37750  68 RGPFSPDEEKLVIQLHGILGNR-WAAIASQLP-GRTDNEIKNLWNTHL 113
                      89********************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-23865IPR009057Homeodomain-like
PROSITE profilePS5129424.7081066IPR017930Myb domain
SuperFamilySSF466898.07E-3111109IPR009057Homeodomain-like
SMARTSM007179.3E-151464IPR001005SANT/Myb domain
PfamPF002491.4E-161562IPR001005SANT/Myb domain
CDDcd001678.32E-121762No hitNo description
Gene3DG3DSA:1.10.10.602.4E-2566118IPR009057Homeodomain-like
SMARTSM007174.0E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129419.71467117IPR017930Myb domain
PfamPF002493.7E-1468113IPR001005SANT/Myb domain
CDDcd001671.72E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0009909Biological Processregulation of flower development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MGRAPCCDKR MGLKKGPWTP EEDEKLIEYI NKNGHGSWRS LPRNAGLLRC GKSCRLRWTN  60
YLRPDIKRGP FSPDEEKLVI QLHGILGNRW AAIASQLPGR TDNEIKNLWN THLKKRLICL  120
GIDPQTHEPC SNLSGLLQRL PASPSTRHMA QWESARLEAE ARLSKESLLF VPSSTGKSDS  180
DHILRIWNSE VGEAFRNFNK SQKIACESSI SQASSSTKCG SAASGTIAER SLCLAGPSVA  240
GVNQIEDTKC QSSRSAFEDI PPRSDSASSN DLEDSSESTL QLLLDFPGTN DMSFLATTDD  300
YMMYSANNEL NVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-29131175108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00114ampDAPTransfer from AT3G61250Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108321.10.0transcription factor MYB41-like isoform X1
SwissprotQ9M2D91e-122MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A068UKS70.0A0A068UKS7_COFCA; Uncharacterized protein
STRINGSolyc01g094360.2.11e-152(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.11e-122myb domain protein 17