PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g36500
Common NameGSCOC_T00003916001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRF
Protein Properties Length: 455aa    MW: 49300.4 Da    PI: 8.9234
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g36500genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.91.8e-23126171146
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskees 46 
                  daepgrCrRtDGKkWRC r+v++++k+CErH+hrg++rsrk++e+s
  Cc02_g36500 126 DAEPGRCRRTDGKKWRCYRDVVPNQKYCERHMHRGCQRSRKHVETS 171
                  79*****************************************975 PP
2WRC70.12.6e-22341377339
          WRC   3 epgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 
                  ep+rCrRtDGKkWRCsr+v+++kk+CErHlhrg ++ 
  Cc02_g36500 341 EPLRCRRTDGKKWRCSRDVVPDKKYCERHLHRGVKKA 377
                  99*******************************9875 PP
3QLQ41.34.6e-155791337
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                 FTa+Qlq+L  Q+ +++y++a++PvP +L++++++
  Cc02_g36500 57 FTAEQLQQLQLQVVIFRYILAGLPVPIDLVLPVWR 91
                 *********************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.0E-55591IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.295691IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.1E-115790IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.468126170IPR014977WRC domain
PfamPF088793.6E-18127169IPR014977WRC domain
PROSITE profilePS5166721.796339383IPR014977WRC domain
PfamPF088796.3E-19341377IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MQPQLLSIND DVDKGVVGRD GTRKKREGSP LSNLELGIGD SRGLRGVVKE EKDQLVFTAE  60
QLQQLQLQVV IFRYILAGLP VPIDLVLPVW RSLAASLGSS KSGIYDQLPS FLGFSPRDFD  120
YRSMMDAEPG RCRRTDGKKW RCYRDVVPNQ KYCERHMHRG CQRSRKHVET SEDDTKANSS  180
AINSDIFASS MKTSNATTTD SRTPAMLSTS LNLTVPCPSI SKSVPETLKS SSAPYTGNGN  240
LESKGDNVMT VNNGTSTSSL IRVLADKNNT KYGSNCTDGI GFECSNISTN KIDQSSGGNK  300
KSGDASVVPG FGLSPKSVLQ CSTASNCNQL NFDCKTEVEV EPLRCRRTDG KKWRCSRDVV  360
PDKKYCERHL HRGVKKAVAG SKLIIGAPAA PPSHNIQTRG TATKVEKLNT NLSISIAANP  420
QHTSDADSSS FSNSDATTVT DENVTSSHIL TLSP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027108172.10.0growth-regulating factor 9 isoform X1
RefseqXP_027172919.10.0growth-regulating factor 9-like isoform X1
TrEMBLA0A068VDN40.0A0A068VDN4_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA77981922
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.13e-40growth-regulating factor 9