PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g35050
Common NameGSCOC_T00011818001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family TALE
Protein Properties Length: 325aa    MW: 36202.5 Da    PI: 4.8235
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g35050genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.6e-102532852355
                  SS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  23 rypsaeereeLAkklgLterqVkvWFqNrRake 55 
                  +yp++ee+ +L++ +gL+++q+ +WF N+R ++
  Cc02_g35050 253 PYPTEEEKNKLSEATGLDQKQINNWFINHRKRH 285
                  8*****************************985 PP
2ELK38.82e-13205226122
          ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                  ELK++L+rKYsgyL+sL++EF+
  Cc02_g35050 205 ELKEMLMRKYSGYLSSLRKEFL 226
                  9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012556.7E-1656100IPR005540KNOX1
PfamPF037901.9E-175896IPR005540KNOX1
SMARTSM012561.2E-22103154IPR005541KNOX2
PfamPF037912.1E-21107153IPR005541KNOX2
PfamPF037892.1E-10205226IPR005539ELK domain
PROSITE profilePS5121311.383205225IPR005539ELK domain
SMARTSM011883.1E-7205226IPR005539ELK domain
PROSITE profilePS5007112.422225288IPR001356Homeobox domain
SuperFamilySSF466895.56E-19227298IPR009057Homeodomain-like
SMARTSM003898.6E-13227292IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.3E-26230290IPR009057Homeodomain-like
CDDcd000862.13E-12241289No hitNo description
PfamPF059201.8E-16245284IPR008422Homeobox KN domain
PROSITE patternPS000270263286IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDELYRIHTS FSCPDGGAVE VGSMRGLDRS SPVENLVQFR PGENSHDEVI GSEMSDLLKI  60
QIASHHLYPN LVSAYVECRK VGAPPEMASL LEEISKASRP ISSPSGISAD PELDQFMESY  120
CEALHRYKEE LLKPFDEATT FLSNIELELN NLCKENFTTT TSSSMTSTNY YSDEAGVTSD  180
EDLSCGEVEV AESQESSAAG QGESELKEML MRKYSGYLSS LRKEFLKKRK KGKLPKDARI  240
ALLDWWNTHY RWPYPTEEEK NKLSEATGLD QKQINNWFIN HRKRHWKPSE DMRFALMQGV  300
SAGTPSPGGP ICFDTAGGNG GFGI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1220229LRKEFLKKRK
2226230KKRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in shoot formation during early embryogenesis. {ECO:0000269|PubMed:10488233}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107947.10.0homeobox protein knotted-1-like 1 isoform X1
SwissprotQ9FP292e-94KNOS1_ORYSJ; Homeobox protein knotted-1-like 1
TrEMBLA0A068VEZ60.0A0A068VEZ6_COFCA; Uncharacterized protein
STRINGVIT_14s0060g01180.t011e-133(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-69KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Park SH, et al.
    A Ds-insertion mutant of OSH6 (Oryza sativa Homeobox 6) exhibits outgrowth of vestigial leaf-like structures, bracts, in rice.
    Planta, 2007. 227(1): p. 1-12
    [PMID:17624547]