PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g34640 | ||||||||
Common Name | GSCOC_T00000723001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | GATA | ||||||||
Protein Properties | Length: 167aa MW: 18623.7 Da PI: 10.7119 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.8 | 8.5e-20 | 27 | 60 | 1 | 34 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+ C+ttkTplWR+gp g+k+LCnaCG+++rkk+ Cc02_g34640 27 CVDCKTTKTPLWRSGPAGPKSLCNACGIRHRKKR 60 ********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 6.2E-15 | 21 | 72 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 12.743 | 21 | 57 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.23E-13 | 22 | 66 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 6.4E-16 | 25 | 60 | IPR013088 | Zinc finger, NHR/GATA-type |
Pfam | PF00320 | 1.4E-17 | 27 | 60 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 27 | 52 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 1.08E-12 | 27 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
MDPNKKVEEE ILPPQEMITR TADEKCCVDC KTTKTPLWRS GPAGPKSLCN ACGIRHRKKR 60 AATGTSPATS TATVGLDKEE EKIKKEKHEE TIVKKKRRAN IRDGKCGKLS VGWRQRFRAF 120 GQGVVLYQRQ RSPVLRKRQS IHHRKLGEVE QAAVLLMALS CGSVFA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 93 | 97 | KKKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027102498.1 | 1e-119 | GATA transcription factor 16-like | ||||
TrEMBL | A0A068V9S9 | 1e-118 | A0A068V9S9_COFCA; Uncharacterized protein | ||||
STRING | XP_009612537.1 | 6e-39 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12750 | 17 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49300.1 | 4e-25 | GATA transcription factor 16 |