PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34100
Common NameGSCOC_T00000645001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 346aa    MW: 38140.4 Da    PI: 4.9038
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34100genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.9e-14167212555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ ++f  L  ++P +     kK++K++iL  A+eY+k+Lq
  Cc02_g34100 167 HIIAERKRREQLSQRFMALSAIVPGL-----KKMDKSSILGDAIEYLKHLQ 212
                  899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.567162211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-17163231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-17167224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-15167216No hitNo description
PfamPF000101.7E-11167212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-15168217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MEDPLSNDDF NIMDFLNDEL SAAPADDFQN SSFPEGNPSF SNIFPSCNST PALCEPSVME  60
AHPVGFETPA KQHKTNGYDS LNIHNMPNFG QASSSPMILT FGNPNMPEIN PHQVTLGTLN  120
PEDDAVSEVL TSHGSFAKLD EAAKTTVQTK AKKPGGRVRP PSQTYDHIIA ERKRREQLSQ  180
RFMALSAIVP GLKKMDKSSI LGDAIEYLKH LQERVKTLEE KAARQTMESV VLVKRSQLLL  240
EDEGSSDEVA GPNEQPLPEF EAKVCDKNVL LRIHCKNYKG VLIKILSQID KLNLAVLNTC  300
VSPFGNFALD ITIIAEVSFL YIGLGTNLKF DIFLINFLLI DFSTI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170175ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107757.10.0transcription factor bHLH18-like
RefseqXP_027114692.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A068V8Y80.0A0A068V8Y8_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-48bHLH family protein