PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34090
Common NameGSCOC_T00000644001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 315aa    MW: 34675.4 Da    PI: 4.7209
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34090genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.81.2e-10138183555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ ++f  L  ++P +     kK++K ++L  A+ Y+k+Lq
  Cc02_g34090 138 HILAERKRREQLSQGFVALSAIVPGL-----KKMDKTSVLGDAIIYLKHLQ 183
                  8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.941133182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.84E-16137203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.5E-8138183IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-15138196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.23E-11138187No hitNo description
SMARTSM003533.8E-12139188IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEDPFVDDQC DIMDYFDEDF TAALGEDLES NLSAVSAMEA PPISIEIPAP QQNSNSCNSA  60
ATLENMPNHH NQPIILTFGN PSTPEINPQP LNLEDDRVVS EVLTSHGSFV NLEEAAQNAR  120
KKKKTGGRVR PASQIHDHIL AERKRREQLS QGFVALSAIV PGLKKMDKTS VLGDAIIYLK  180
HLQERVKTLE EQVAQQTMQS VVLLKRSQLL VEDEGSSDDT GGPDEQPLPE IEAKMCNRNI  240
LLRIHCEKHK GVLVKILSEV EKHNLAVMNT CVAPFGNFAL DITIIAEMEK EFSLTIQELV  300
KILGSAVHRG TVAD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1141146ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027114691.10.0transcription factor NAI1-like
TrEMBLA0A068V9N70.0A0A068V9N7_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-53bHLH family protein