PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34070
Common NameGSCOC_T00000642001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 342aa    MW: 38079 Da    PI: 4.9494
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.44.7e-12165210555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h  +Er+RR+++ ++f  L +l+P +     kK++K ++L  A+ Y+k+Lq
  Cc02_g34070 165 HIVAERKRREQLSQRFVALSTLVPGL-----KKMDKTSVLGDAISYLKHLQ 210
                  8899**********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.281160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17161230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.0E-17165226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.07E-12165214No hitNo description
PfamPF000101.4E-9165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.3E-14166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MDNPVSSSWF SELGMEDSFF NDQYDVMDFL DEEFLNANLS PEGNTNSSTF IPVSTCSTTL  60
SAFSAMDAPP ISTERPAKQQ KSDDLNSSSL GNIPNHHNQP MILTFGNPVM PAEINPQQIN  120
LEDDAVSEIL KSHGSFVNLE EATRSSQKRK KTGGRTRPAS QTYDHIVAER KRREQLSQRF  180
VALSTLVPGL KKMDKTSVLG DAISYLKHLQ ERVKTLEEQA AKQNMESMVL VKRSQLLVED  240
EGSSDEMGGS DEQPLPEIEA KLCNKNILLR VHCRNYRGVL VKILSEVEMQ NLTVIHTTVA  300
PFGRLALDVT LMAEMEKEFN LTMQELVKSL QSALQRGKQG D*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1168173ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107754.10.0transcription factor bHLH18-like isoform X1
TrEMBLA0A068V9K60.0A0A068V9K6_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-55bHLH family protein