PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Cc02_g34040 | ||||||||
Common Name | GSCOC_T00000635001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
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Family | bHLH | ||||||||
Protein Properties | Length: 204aa MW: 23096.5 Da PI: 8.2156 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 39 | 1.5e-12 | 45 | 90 | 5 | 55 |
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h +Er+RR++i ++f L l+P + kK++K ++L A++Y+k+Lq Cc02_g34040 45 HIVAERKRREQISQRFVALSALVPGL-----KKMDKNSVLGDAINYLKHLQ 90 8899**********************.....9******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.091 | 40 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.72E-18 | 44 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-10 | 45 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 7.24E-12 | 45 | 94 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 1.3E-17 | 45 | 106 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-14 | 46 | 95 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS51671 | 10.868 | 130 | 203 | IPR002912 | ACT domain |
CDD | cd02116 | 0.00242 | 131 | 188 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008152 | Biological Process | metabolic process | ||||
GO:0016597 | Molecular Function | amino acid binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 204 aa Download sequence Send to blast |
MVLTFGNCQQ VTLGSFSPEG DTIYSKEKEK ENCPSREASI QTYDHIVAER KRREQISQRF 60 VALSALVPGL KKMDKNSVLG DAINYLKHLQ ERVQTLEEQA ANQRRESSMG CTDEQILPEI 120 EAKVCNKNIL LRIHCKNHRG LLVKILSEIE KRNLSVVNTN VAPFGSLALD ISIIAEMDKE 180 FNLTMQELVR RLRSALRQVQ QSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 48 | 53 | ERKRRE |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027102494.1 | 1e-87 | transcription factor bHLH25-like | ||||
Refseq | XP_027109704.1 | 8e-87 | transcription factor bHLH18-like | ||||
Refseq | XP_027109705.1 | 8e-87 | transcription factor bHLH18-like | ||||
Refseq | XP_027154852.1 | 1e-87 | transcription factor bHLH25-like | ||||
Swissprot | Q9T072 | 7e-46 | BH025_ARATH; Transcription factor bHLH25 | ||||
TrEMBL | A0A068V9L9 | 1e-147 | A0A068V9L9_COFCA; Uncharacterized protein | ||||
STRING | cassava4.1_010938m | 2e-61 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1760 | 24 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37850.1 | 3e-48 | bHLH family protein |