PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g34020
Common NameGSCOC_T00008657001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bHLH
Protein Properties Length: 331aa    MW: 36139.3 Da    PI: 6.3757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g34020genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.6e-11159204555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h ++Er+RR+++ ++f  L  ++P +     kK++K ++L  A+ Y+k+L+
  Cc02_g34020 159 HIIAERKRREQLSQRFVALSAIVPGL-----KKMDKTSVLGDAITYLKHLK 204
                  899***********************.....9*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.63E-16155221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.67E-11159208No hitNo description
PfamPF000101.5E-8159203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-15159220IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-12160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.157257330IPR002912ACT domain
CDDcd021160.00385258315No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MEDPFLSDQC DIMDFFDEDI CAALGNDFQA PSCISHLIPR SSSTTALCNA SSSAVEVPQP  60
AANLCTSSAI EIPPAEVERP ARQLKRNRST PVILAFGNPS PTETVNPRQV SLGGLNPEDD  120
AVSEVLTSRV SFPNLEEATK SAPAPKKGRT RPASQTYDHI IAERKRREQL SQRFVALSAI  180
VPGLKKMDKT SVLGDAITYL KHLKERVKTL EEQATKQKMQ SVVLVKKSQL VVEDEGSSDE  240
QRPLPEIEAK LCDKKVLLRV HCENHRGVLV KVLSEIEKLN LAVSNASVAP FGSLALDITI  300
IAEMDKEFSL TMKELVQGLR SALQRAARDS *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14148220270Transcription factor MYC2
5gnj_B2e-14148220270Transcription factor MYC2
5gnj_E2e-14148220270Transcription factor MYC2
5gnj_F2e-14148220270Transcription factor MYC2
5gnj_G2e-14148220270Transcription factor MYC2
5gnj_I2e-14148220270Transcription factor MYC2
5gnj_M2e-14148220270Transcription factor MYC2
5gnj_N2e-14148220270Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1162167ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103298.10.0transcription factor bHLH18-like
SwissprotQ9T0721e-55BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A068VEC00.0A0A068VEC0_COFCA; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.18e-50bHLH family protein