PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g34000

Common Name

GSCOC_T00008655001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 345aa MW: 38084.1 Da PI: 6.2429

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g34000	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.9	4.1e-09	165	210	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ f+ L ++lP + kK++K ++L A++ +k+Lq Cc02_g34000 165 HIMAERKRRKHLGLLFSSLSSILPGL-----KKMDKTSVLGDAINQLKHLQ 210 999*********************.....9****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.22E-14	158	225	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.459	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.5E-6	165	210	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.2E-12	165	222	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.5E-10	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MDNSASSWFS AQEMEDHFLG DQCDIMNPFE EDLFGAFGDD LHNCDLPTKG NSSIFPIIET 60 NNSATRLCVS AAIEAPPIVT ERPTQLQNPN GCSWSTVYNF SSFDQPSSSP MLLTFGTLNP 120 GENKVCDVLS SNGSFVNFDH RTTRIQKRGK RTGGRTRSPS QTYDHIMAER KRRKHLGLLF 180 SSLSSILPGL KKMDKTSVLG DAINQLKHLQ EKVKTLEEQV TKQTVESVVL VKKSQRLVAD 240 DVSSDERGCN NNNQLLFPQI EAKVCDKEVL PKVHCENHQP GVLIKLLSKV ENLNLAVTNT 300 SVTPFGNSAL EVTIIAEMEK EFNMTTKELA KNLGSALHLV AQES*

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MDNSASSWFS AQEMEDHFLG DQCDIMNPFE EDLFGAFGDD LHNCDLPTKG NSSIFPIIET  60
NNSATRLCVS AAIEAPPIVT ERPTQLQNPN GCSWSTVYNF SSFDQPSSSP MLLTFGTLNP  120
GENKVCDVLS SNGSFVNFDH RTTRIQKRGK RTGGRTRSPS QTYDHIMAER KRRKHLGLLF  180
SSLSSILPGL KKMDKTSVLG DAINQLKHLQ EKVKTLEEQV TKQTVESVVL VKKSQRLVAD  240
DVSSDERGCN NNNQLLFPQI EAKVCDKEVL PKVHCENHQP GVLIKLLSKV ENLNLAVTNT  300
SVTPFGNSAL EVTIIAEMEK EFNMTTKELA KNLGSALHLV AQES*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027107745.1	0.0	transcription factor bHLH18-like
TrEMBL	A0A068VBD6	0.0	A0A068VBD6_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1760	24	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	8e-38	bHLH family protein