PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g32920
Common NameGSCOC_T00016722001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HSF
Protein Properties Length: 298aa    MW: 34533.3 Da    PI: 9.3693
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g32920genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind98.37.3e-31151052101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+++++ed e++++isw+++g+s++v+d+ ++a +vLpkyF h+nf+SFv QLn YgF+k+  ++          e+++k+F++g+++ll +i+
   Cc02_g32920  15 FLTKTFQMVEDTETNNMISWNSDGTSLIVWDHLKLAAEVLPKYFSHNNFSSFVYQLNNYGFRKIGPRQ---------YEYENKWFQRGQEHLLMNIR 102
                   9***************************************************************9998.........78****************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+ 
   Cc02_g32920 103 RRY 105
                   *96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.102.8E-321199IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.22E-2911104IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004155.1E-4211104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-171538IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-2715104IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-175365IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.9E-176678IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEFMKGGCRF TPPPFLTKTF QMVEDTETNN MISWNSDGTS LIVWDHLKLA AEVLPKYFSH  60
NNFSSFVYQL NNYGFRKIGP RQYEYENKWF QRGQEHLLMN IRRRYDADPT LRKRRGPRKQ  120
HEEITAARPS MEAELEIFED HMNALKEEIT SSNYRIGKLE SSIATFKKNV KRMEAKSKAL  180
IKVLAGKFGP AVVEKIIQRV EEELELETFQ TMKRRRVILP QSSKTTTKSM NDGACGMGQD  240
DQEANTSLAE SKQRADQKLW KKFVGDDSVS EDESEQQLLK QHSRIDMAIS KSYGYFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d8k_B5e-24131043105Heat shock factor protein 2
5d8l_B5e-24131043105Heat shock factor protein 2
5d8l_D5e-24131043105Heat shock factor protein 2
5d8l_F5e-24131043105Heat shock factor protein 2
5d8l_H5e-24131043105Heat shock factor protein 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1212216KRRRV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103251.10.0heat stress transcription factor A-6b-like
TrEMBLA0A068V5A40.0A0A068V5A4_COFCA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.12e-39heat shock transcription factor A6B