PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g31070
Common NameGSCOC_T00011098001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 488aa    MW: 54652.8 Da    PI: 8.4632
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g31070genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05628123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 + C++C k F r  nL+ H r H
  Cc02_g31070  6 FICEICQKGFQRDQNLQLHRRGH 28
                 89*******************88 PP
2zf-C2H2130.0003182104123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H rt+
  Cc02_g31070  82 WKCDKCSKKYAVQSDWKAHSRTC 104
                  58*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-6328IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-7428No hitNo description
SMARTSM003550.041628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.554628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.1E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.0E-777102No hitNo description
SMARTSM0035513082102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MATKRFICEI CQKGFQRDQN LQLHRRGHNL PWKLRQRTST ETRKRVYVCP ETCCVHHNPS  60
RALGDLTGIK KHYFRKHGEK KWKCDKCSKK YAVQSDWKAH SRTCGTREYK CECGTIFSRR  120
DSFITHRAFC DALAEENSKI SQVLAANKGG TNIESPEDLE TMSTRTFENK LSTSMAAPDL  180
SHLDGTISMM KTPPNELMQM SMEPSNIAGL TMFSSTLLGS PRNLSFPTSR PQLSTNSPTV  240
LNGYNDSNSK GHQEASIAQF SATALMQKAA QIGSIMRSNI SSPMVQKGFT PNMAPLFYNG  300
TLKYLSDTNI FHQRVTEKVS ASDQLHDPLS NGDESSRMQN LGTNNGLLFN ENLDFLHNNE  360
GACDADDGDT TINGRNQAGI YARSLKNSNF MTLDLLGIGG FGHTAFHGMQ QQEMDVEAAT  420
TVLEDASCIG YHFLSVKNRL SIYIYIYIYI YIYIYIYMIR LVNWIGFGSN TTRSTLDVMG  480
SVLSYTT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C3e-3478143368Zinc finger protein JACKDAW
5b3h_F3e-3478143368Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107709.10.0zinc finger protein GAI-ASSOCIATED FACTOR 1-like
SwissprotQ9SCQ63e-89IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A068VGN40.0A0A068VGN4_COFCA; Uncharacterized protein
STRINGXP_010259675.11e-120(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44160.12e-80C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]