PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g30660
Common NameGSCOC_T00023802001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family bZIP
Protein Properties Length: 432aa    MW: 46930.6 Da    PI: 4.8261
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g30660genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_133.87.6e-11268330357
                  XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH........HHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeek........vkeLeaeNkaLkkeleelkkeva 57 
                  + kr rr+ +NRe+ArrsR+RK+a + eLe+         v +L  eN++L k+l  ++ ++ 
  Cc02_g30660 268 DAKRMRRMLSNRESARRSRRRKQAHLTELETQacychcffVSQLRVENSSLLKRLTDISTKYN 330
                  68*****************************85555555568999999999998888777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.0E-10265329No hitNo description
SMARTSM003382.9E-13266338IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.967268300IPR004827Basic-leucine zipper domain
PfamPF001705.0E-9269329IPR004827Basic-leucine zipper domain
SuperFamilySSF579594.5E-8270304No hitNo description
PROSITE patternPS000360273288IPR004827Basic-leucine zipper domain
PfamPF124988.8E-28345428IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071215Biological Processcellular response to abscisic acid stimulus
GO:0071333Biological Processcellular response to glucose stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MDRVFSVDDI ADQFWSPPPM QIRLGGDEEE SGSVSSSANN NNTASSAKMI NRSSSEWAFQ  60
RFLQEASATN HSPSPPQPQP QPASSNPRPQ SDVVEIKDNI SNRDSNAATS DNKNKILNNS  120
SDNQEVKVAS TTSFGGPVPP NIPVDSEEYQ AFLKSKLDLA CAAVALSRAN YMKPRESAAM  180
LPDSASQGSS TSTTPVSQVV SKGVGPDPVK GQDNDVGGPL GIPSLPALQK KSGIQMRSTT  240
SGSSREEESD EDEGEEEIEA AENMDPADAK RMRRMLSNRE SARRSRRRKQ AHLTELETQA  300
CYCHCFFVSQ LRVENSSLLK RLTDISTKYN EAAVDNRVLK ADVETLRAKV KMAEETVKRV  360
TGLSPLFQAM SEISTISLPS FAASPSDTST DAAVPVQDDS QRHYYQAPSE SCNNSSFREQ  420
DRENILNATR G*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1282289RRSRRRKQ
2284289SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00040PBMTransfer from AT5G28770Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0144281e-33BT014428.1 Lycopersicon esculentum clone 133746F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027107384.10.0light-inducible protein CPRF2-like isoform X2
SwissprotQ990901e-111CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A068UEB80.0A0A068UEB8_COFCA; Uncharacterized protein
STRINGSolyc01g097330.2.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29342444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.21e-35bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]