PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g29570
Common NameGSCOC_T00018394001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family GRAS
Protein Properties Length: 293aa    MW: 33501.6 Da    PI: 6.1852
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g29570genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3043.5e-931287106373
         GRAS 106 vegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEala 203
                  +ege+ vHiiD+   +++QW++Ll++L +R+egpp+lRiTg+++    +ke l +++ rL++ Ae+l++pf+f + ++++le+l++e+Lrvk+gEa+a
  Cc02_g29570   1 MEGEKVVHIIDLHCFEPAQWINLLEELKARQEGPPHLRITGIHE----QKEVLDQMAVRLQEAAEKLDIPFQFCP-MVSKLENLDIESLRVKSGEAVA 93 
                  799*****************************************....9**************************.799******************* PP

         GRAS 204 Vnlvlqlhrll........................desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                  +++vlqlh+ll                        d++ s + ++ ++L+++++lsPk++vv+e+e++hn + ++er+ eal++y+alfd+le++lpr
  Cc02_g29570  94 ISSVLQLHSLLaydddtmrrnspsrdvmslygaspDSQSSPPPKTLSFLNALWGLSPKLMVVTEHESNHNCHGLMERVDEALKFYAALFDCLENTLPR 191
                  ********************************88755555555799**************************************************** PP

         GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                  +  er+k+E++l+g+ei++++aceg er++rhe+l kW  rle aGF++++ls++ +kqa ++l+ ++ dg++++eesg ++++W+d pL+svSaW
  Cc02_g29570 192 APVERQKIEKFLFGEEIKSIIACEGLERKARHEKLDKWIPRLEFAGFGKINLSYNGMKQAMRVLQSCNYDGFKIKEESGYFIICWHDYPLFSVSAW 287
                  ************************************************************************************************ PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.521268IPR005202Transcription factor GRAS
PfamPF035141.2E-901287IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MEGEKVVHII DLHCFEPAQW INLLEELKAR QEGPPHLRIT GIHEQKEVLD QMAVRLQEAA  60
EKLDIPFQFC PMVSKLENLD IESLRVKSGE AVAISSVLQL HSLLAYDDDT MRRNSPSRDV  120
MSLYGASPDS QSSPPPKTLS FLNALWGLSP KLMVVTEHES NHNCHGLMER VDEALKFYAA  180
LFDCLENTLP RAPVERQKIE KFLFGEEIKS IIACEGLERK ARHEKLDKWI PRLEFAGFGK  240
INLSYNGMKQ AMRVLQSCNY DGFKIKEESG YFIICWHDYP LFSVSAWGFK RY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-411287124378Protein SCARECROW
5b3h_A3e-411287123377Protein SCARECROW
5b3h_D3e-411287123377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027103016.10.0scarecrow-like protein 3
RefseqXP_027103018.10.0scarecrow-like protein 3
RefseqXP_027122018.10.0scarecrow-like protein 3
RefseqXP_027158097.10.0scarecrow-like protein 3
SwissprotQ9LPR81e-122SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A068V7120.0A0A068V712_COFCA; Uncharacterized protein
STRINGcassava4.1_023504m1e-149(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1604136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-124scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]