PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g28060
Common NameGSCOC_T00025167001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family NF-YA
Protein Properties Length: 308aa    MW: 33952.6 Da    PI: 9.7694
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g28060genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.21.2e-32146202158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  +ep+YVNaKQy++Il+RRq+Rak+e ekk+  k+rkpylheSRh+hA+rR+RgsgGrF
  Cc02_g28060 146 EEPVYVNAKQYHGILRRRQSRAKAEMEKKI-MKGRKPYLHESRHQHAMRRARGSGGRF 202
                  69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005216.8E-37144205IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115238.177145205IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.6E-28147202IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006168.6E-25148170IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860150170IPR018362CCAAT-binding factor, conserved site
PRINTSPR006168.6E-25179202IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MPTIARNEGR QLETEVHNIT SSRVYTQPWW RGYESTCLPS PGESVNGSVS ESVTKERDTS  60
VAPPSESNGS GGQGPQQVKH APSTIPMSGH LDSPSQMELV GHSIMLTPYP YPDPAYGGVI  120
TYGAPVHPQY FGIHQTRMPL PLQMEEEPVY VNAKQYHGIL RRRQSRAKAE MEKKIMKGRK  180
PYLHESRHQH AMRRARGSGG RFLNTKKLEN NESKSSKSAS KEQTKCGDAV PTQSGNSSGS  240
EHLSTDCNGH SDQLREKKQM LSNGNGRGIS SFYYQQSSGS ERGRQHFNQE SWSLLVNQAP  300
RGAASSN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A4e-21146206262NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5976011e-57EU597601.1 Coffea arabica clone CFGA965 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106866.10.0nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_027106867.10.0nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_027113738.10.0nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_027163127.10.0nuclear transcription factor Y subunit A-7-like
TrEMBLA0A068UH680.0A0A068UH68_COFCA; Uncharacterized protein
STRINGSolyc01g087240.2.12e-94(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA112322025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.42e-42nuclear factor Y, subunit A1