PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g27930 | ||||||||
Common Name | GSCOC_T00025150001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 302aa MW: 32632.4 Da PI: 5.3003 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27.5 | 7.1e-09 | 7 | 36 | 19 | 48 |
TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48 G g+W+ Iar g+ R++k+c++rw +yl Cc02_g27930 7 NGQGCWSDIARNAGLQRCGKSCRLRWINYL 36 57789***********************97 PP | |||||||
2 | Myb_DNA-binding | 52.7 | 9.5e-17 | 42 | 85 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+++++E+el+v+++ lG++ W+ Ia++++ gRt++++k++w++ Cc02_g27930 42 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 85 89********************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.718 | 1 | 36 | IPR017930 | Myb domain |
SMART | SM00717 | 53 | 2 | 38 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-16 | 2 | 43 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.18E-21 | 5 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.7E-7 | 7 | 36 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.81E-4 | 8 | 36 | No hit | No description |
PROSITE profile | PS51294 | 25.534 | 37 | 91 | IPR017930 | Myb domain |
SMART | SM00717 | 9.0E-16 | 41 | 89 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 42 | 85 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-25 | 44 | 92 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.11E-11 | 44 | 84 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 302 aa Download sequence Send to blast |
MNYMLTNGQG CWSDIARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIVHLHSIL 60 GNRWSQIAAR LPGRTDNEIK NFWNSTIKKR LKNNNAITST SSPNTSDSSD PRAIMLGGLM 120 QPMQAEQDVF SICVDSSSSS PPCMQAILSI TQGNPFNPFP PLHDSAAYLD INGSASAAGA 180 AGLYNLSAAH VGGGGGGSAG SLGDYGLVEP YVMGLESDLS LPALEGRAFD NINAANDQSV 240 LDKRLVHNNH HFNGNENIKV VDDFVGIGNH WNGENLRMGE LDWEGLLANV SSLPYLDFQV 300 E* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 6e-22 | 8 | 91 | 26 | 108 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00336 | DAP | Transfer from AT3G08500 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027162565.1 | 0.0 | transcription factor MYB83 | ||||
TrEMBL | A0A068UJI6 | 0.0 | A0A068UJI6_COFCA; Uncharacterized protein | ||||
STRING | XP_009612035.1 | 1e-104 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G12870.1 | 5e-59 | myb domain protein 46 |