PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27930
Common NameGSCOC_T00025150001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family MYB
Protein Properties Length: 302aa    MW: 32632.4 Da    PI: 5.3003
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27930genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.57.1e-097361948
                     TTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 19 lGggtWktIartmgkgRtlkqcksrwqkyl 48
                      G g+W+ Iar  g+ R++k+c++rw +yl
      Cc02_g27930  7 NGQGCWSDIARNAGLQRCGKSCRLRWINYL 36
                     57789***********************97 PP

2Myb_DNA-binding52.79.5e-174285146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     rg+++++E+el+v+++  lG++ W+ Ia++++ gRt++++k++w++
      Cc02_g27930 42 RGAFSPQEEELIVHLHSILGNR-WSQIAARLP-GRTDNEIKNFWNS 85
                     89********************.*********.***********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.718136IPR017930Myb domain
SMARTSM0071753238IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.5E-16243IPR009057Homeodomain-like
SuperFamilySSF466894.18E-21583IPR009057Homeodomain-like
PfamPF002497.7E-7736IPR001005SANT/Myb domain
CDDcd001671.81E-4836No hitNo description
PROSITE profilePS5129425.5343791IPR017930Myb domain
SMARTSM007179.0E-164189IPR001005SANT/Myb domain
PfamPF002494.6E-154285IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-254492IPR009057Homeodomain-like
CDDcd001671.11E-114484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNYMLTNGQG CWSDIARNAG LQRCGKSCRL RWINYLRPDL KRGAFSPQEE ELIVHLHSIL  60
GNRWSQIAAR LPGRTDNEIK NFWNSTIKKR LKNNNAITST SSPNTSDSSD PRAIMLGGLM  120
QPMQAEQDVF SICVDSSSSS PPCMQAILSI TQGNPFNPFP PLHDSAAYLD INGSASAAGA  180
AGLYNLSAAH VGGGGGGSAG SLGDYGLVEP YVMGLESDLS LPALEGRAFD NINAANDQSV  240
LDKRLVHNNH HFNGNENIKV VDDFVGIGNH WNGENLRMGE LDWEGLLANV SSLPYLDFQV  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A6e-2289126108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00336DAPTransfer from AT3G08500Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027162565.10.0transcription factor MYB83
TrEMBLA0A068UJI60.0A0A068UJI6_COFCA; Uncharacterized protein
STRINGXP_009612035.11e-104(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12870.15e-59myb domain protein 46