PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g27820
Common NameGSCOC_T00025132001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family C2H2
Protein Properties Length: 326aa    MW: 36629.3 Da    PI: 8.2508
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g27820genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.23.4e-06164183120
                  EEETTTTEEESSHHHHHHHH CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                  ++Cp C k+F+r  nL+ H+
  Cc02_g27820 164 FSCPVCFKTFNRYNNLQMHM 183
                  89*****************9 PP
2zf-C2H215.84e-05248270123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  + C +Cgk+F  k + ++H +++
  Cc02_g27820 248 FMCRKCGKPFAVKGDWRTHEKNC 270
                  89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.49E-5157186No hitNo description
PROSITE profilePS5015710.159164191IPR007087Zinc finger, C2H2
SMARTSM003550.21164186IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.609.6E-6164183IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280166186IPR007087Zinc finger, C2H2
SuperFamilySSF576674.04E-6231268No hitNo description
Gene3DG3DSA:3.30.160.608.4E-5244268IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035572248268IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MAEPCYYNFF PGWCNFIPHH PHFSSSNSNA VNSISSSEIE FSLSPPSPPR KEALPLLNNL  60
SCRPDEQQDF SGYALEDDRC TSTKTESSLS GTPPLHDSVT VALNIGLPSP SSDLSSSRLP  120
SCNWDKREKE SGNVLSELPL NDKLNKGQYW IPSPSQILIG PTQFSCPVCF KTFNRYNNLQ  180
MHMWGHGSQY RKGPESLRGT QPTAMLKLPC YCCAPGCKHN IDHPRTRPLK DFRTLQTHYK  240
RKHGIKPFMC RKCGKPFAVK GDWRTHEKNC GKIWYCICGS DFKHKRSLKD HIRAFGRGHG  300
ALGIHVSEEE DDSASDIDQE RESPA*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027102256.10.0zinc finger protein WIP2-like
RefseqXP_027106855.10.0zinc finger protein WIP2-like
RefseqXP_027162652.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-118ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A068UHM20.0A0A068UHM2_COFCA; Uncharacterized protein
STRINGGLYMA12G36660.21e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-113C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]