PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g27520

Common Name

GSCOC_T00025082001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

bHLH

Protein Properties

Length: 329aa MW: 35325.9 Da PI: 8.4795

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g27520	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.1	2.9e-12	256	301	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P+ +k + a++L +AveYIk+Lq Cc02_g27520 256 SIAERMRRTRISERMKKLQELFPNM----DKQTNTADMLDLAVEYIKDLQ 301 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.443	250	300	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.44E-15	253	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.56E-13	254	305	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.1E-14	255	311	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.9E-9	256	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-13	256	306	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MKLEMNEVES NPSGMQQNRN GNGFCSSNSS SSTMVSVGYQ AAVCAGGGTV VGSYTVPLGV 60 ENQGQVRMNS NANGSNLIRQ SSSPAGFFSG FDAVGEVGNF RSGNGTNGEA SSSTGGLNNR 120 VNFNSGPSSS SRFMPSIAEN GNQNGGTGSS EHRQLGNGNE TNQGYVSSFL NDTWSDSPFN 180 SLKRNRDGDM KVYSSFNGSE NQDGGPRNQT PGLIHHLSLP KTAGEMAAIE KYMQFQQDSV 240 PCKIRAKRGC ATHPRSIAER MRRTRISERM KKLQELFPNM DKQTNTADML DLAVEYIKDL 300 QNQVQTLTET RAKCICSSKQ PQCSHPAV*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106832.1	0.0	transcription factor bHLH130-like
Swissprot	Q66GR3	6e-58	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A068UHK5	0.0	A0A068UHK5_COFCA; Uncharacterized protein
STRING	Solyc01g086870.2.1	1e-107	(Solanum lycopersicum)
STRING	PGSC0003DMT400065029	1e-107	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4435	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]