PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Cc02_g27090 | ||||||||
Common Name | GSCOC_T00025027001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 31205.1 Da PI: 9.5014 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.7 | 4e-08 | 98 | 122 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 kt+lC f C++Gd+C+FaHg Cc02_g27090 98 KTKLCTKFNTPEGCRFGDKCHFAHG 122 89**********************9 PP | |||||||
2 | zf-CCCH | 26.6 | 1e-08 | 261 | 285 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk + C +f + G C +GdrC+FaH+ Cc02_g27090 261 YKSKMCENFPK-GSCTFGDRCHFAHS 285 89999******.*************7 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 11.235 | 36 | 64 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.2 | 36 | 63 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-5 | 37 | 64 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.9E-6 | 38 | 61 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF14608 | 0.34 | 44 | 61 | No hit | No description |
SuperFamily | SSF90229 | 1.02E-7 | 96 | 126 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0076 | 96 | 123 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.497 | 96 | 124 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.1E-12 | 97 | 126 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.0E-5 | 98 | 122 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF54791 | 5.55E-15 | 158 | 236 | IPR004088 | K Homology domain, type 1 |
SMART | SM00322 | 1.5E-12 | 165 | 235 | IPR004087 | K Homology domain |
PROSITE profile | PS50084 | 14.424 | 166 | 230 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:3.30.1370.10 | 5.9E-16 | 166 | 235 | IPR004088 | K Homology domain, type 1 |
CDD | cd00105 | 6.00E-15 | 168 | 230 | No hit | No description |
Pfam | PF00013 | 1.2E-10 | 168 | 232 | IPR004088 | K Homology domain, type 1 |
Gene3D | G3DSA:4.10.1000.10 | 2.6E-15 | 258 | 293 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.44E-8 | 259 | 291 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.723 | 260 | 287 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.6E-4 | 260 | 286 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.4E-5 | 261 | 285 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003723 | Molecular Function | RNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 295 aa Download sequence Send to blast |
MEFGGRKRER PDGAFTGNGG YKKSRDELES FTTGVGSKSK PCMKFFSTSG CQFGEGCHFL 60 HYVPGYSAHS QLANLGANPA VPGGRNVPFS DGPTLTVKTK LCTKFNTPEG CRFGDKCHFA 120 HGDMELGKSL APGYQDPRSM GPMGRLSGHF EPSPPGLGAA ASFGTSATAK ISIDASLAGA 180 IIGKNGVNSK HICRATGVKL SIKDHETDSN QRNIELEGSF DQIKQASGMV RELIANIGGP 240 TSRTSNTSGS FGRGVPPARQ YKSKMCENFP KGSCTFGDRC HFAHSASELR KPPT* |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027161488.1 | 0.0 | zinc finger CCCH domain-containing protein 14-like | ||||
Swissprot | Q7F8R0 | 1e-105 | C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14 | ||||
TrEMBL | A0A068UHN4 | 0.0 | A0A068UHN4_COFCA; Uncharacterized protein | ||||
STRING | XP_009795947.1 | 1e-139 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA845 | 24 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-70 | C3H family protein |