PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc02_g25370
Common NameGSCOC_T00028755001
Organism
Coffea canephora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family Trihelix
Protein Properties Length: 340aa    MW: 37517.3 Da    PI: 9.7189
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc02_g25370genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.97.2e-2038130186
     trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm...rergferspkqCkekwenlnkrykkikegekkr....tsessstcpyfdqle 86 
                  +W+++e+ aLi+a+r+++ +lrrg+l++++W+ev++ +      g  ++++qC++k+e+l+kry+++ +++       + +  s +++f++++
  Cc02_g25370  38 CWSHDETVALIDAYRDKWYSLRRGNLRANHWQEVADDVasrCPIGNPKTAVQCRHKMEKLRKRYRAEIQRAAPYggskSHRYCSAWVHFKRMD 130
                  8*************************************66556799********************999876432111344456788888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138375.0E-2237132No hitNo description
SMARTSM005951.0E-1146137IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MATSSPSAQD RSTPPLLEGP PAVTIATAAA SRRLPPPCWS HDETVALIDA YRDKWYSLRR  60
GNLRANHWQE VADDVASRCP IGNPKTAVQC RHKMEKLRKR YRAEIQRAAP YGGSKSHRYC  120
SAWVHFKRMD AMEKGPNSSA AAEADEDEED QEDSHVKPIG DIYNTNSLNH TGSYINNNSS  180
NRSSFHGGMV NGGTGFRIRI PGRGNVGPAA AAKVYSRFDE MGGQNPNPNA GVNYGSAKAL  240
RDGFGGRGDI GKRVVGGDVK TGDPLAEMVS AIRVLGDGFV RMERMKMDMT REVEEMRMEM  300
EMKRTEMILE SQQRIVEAFA KAISEKKLKK VKRMQNQEG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027106612.10.0trihelix transcription factor ASIL2-like
TrEMBLA0A068ULR50.0A0A068ULR5_COFCA; Uncharacterized protein
STRINGSolyc01g088820.2.11e-145(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA80282327
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-60Trihelix family protein