PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Cc02_g24840

Common Name

GSCOC_T00028834001

Organism

Coffea canephora

Taxonomic ID

49390

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea

Family

MYB

Protein Properties

Length: 326aa MW: 36881.8 Da PI: 6.2683

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Cc02_g24840	genome	CGSC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43.5	7.3e-14	18	63	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g+W +eEde l++ vk++G+++W++I ++ + Rt+k+c++rw + Cc02_g24840 18 KGPWKAEEDEVLINHVKKYGPRDWSSIRSKGLLQRTGKSCRLRWVN 63 79***********************8887799********87 PP
2	Myb_DNA-binding	46.6	7.6e-15	74	113	3	44
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++++eE+ + +d+ +q+G++ W++Ia +++ gRt++++k++w Cc02_g24840 74 KFSAEEERIVIDLQAQFGNK-WAKIATYLP-GRTDNDVKNFW 113 79****************.*****.********* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	20.993	13	69	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-21	14	66	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.27E-28	16	113	IPR009057	Homeodomain-like
SMART	SM00717	2.1E-11	17	67	IPR001005	SANT/Myb domain
CDD	cd00167	2.65E-11	20	65	No hit	No description
Pfam	PF13921	4.4E-12	21	71	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.5E-18	67	119	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.451	70	121	IPR017930	Myb domain
SMART	SM00717	2.7E-13	71	119	IPR001005	SANT/Myb domain
CDD	cd00167	5.24E-11	74	113	No hit	No description
Pfam	PF00249	9.1E-13	74	113	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048235	Biological Process	pollen sperm cell differentiation
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MAGRRERLTC DEMGEIKKGP WKAEEDEVLI NHVKKYGPRD WSSIRSKGLL QRTGKSCRLR 60 WVNKLRPNLK NGVKFSAEEE RIVIDLQAQF GNKWAKIATY LPGRTDNDVK NFWSSRQKRL 120 ARILQTPASS SSSSSNRSQR NKHVPAIHDV PPFEASKFSS SSEEDSLPKS QSCLSSYTVK 180 SLTVEMEMVP LPELMHPNTL NYEQSFLPPE FDLIEKKPCI ETLSQLPFPQ IPNFQSEFAL 240 SLEHNEVVTR LGDPNYLEAF GSSISSELGN VQLPIMPTCF ESERRSTQIA AKCEIGNPVT 300 PDSFVDDFPI DIFDHIEPLP SPLDW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	4e-29	15	119	24	126	MYB TRANSFORMING PROTEIN
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269\|PubMed:15618418, ECO:0000269\|PubMed:15694308, ECO:0000269\|PubMed:19300502, ECO:0000269\|PubMed:21285328, ECO:0000269\|PubMed:24876252}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269\|PubMed:21441434, ECO:0000269\|PubMed:25057814}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AM464059	3e-46	AM464059.1 Vitis vinifera, whole genome shotgun sequence, contig VV78X130291.4, clone ENTAV 115.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027106540.1	0.0	transcription factor DUO1-like
Refseq	XP_027112927.1	0.0	transcription factor DUO1-like
Swissprot	A0A178VEK7	6e-83	DUO1_ARATH; Transcription factor DUO1
TrEMBL	A0A068UMH9	0.0	A0A068UMH9_COFCA; Uncharacterized protein
STRING	XP_009630342.1	1e-123	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4207	23	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G60460.1	8e-81	MYB family protein

Publications ? help Back to Top
Zheng B,He H,Zheng Y,Wu W,McCormick S An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana. PLoS Genet., 2014. 10(7): p. e1004421 [PMID:25057814] Peters B, et al. A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter. Plant Physiol., 2017. 173(1): p. 280-293 [PMID:27624837] Zheng Z, et al. Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy. Plant Physiol., 2017. 174(3): p. 1764-1778 [PMID:28515145]